Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M16
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    29   0.78 
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    29   0.78 
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po...    28   1.0  
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    27   1.8  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    27   1.8  
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    27   3.1  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    27   3.1  
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    25   7.3  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   7.3  
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c...    25   9.6  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    25   9.6  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   9.6  

>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 437 ILQLSSAMILMDSFYQLLMKFIHNSSLIWTLYLRFI 544
           ++ L+ A  L +  YQ        S  +WTLYL F+
Sbjct: 143 VITLTDAHSLFERAYQTCKFHFSKSQCVWTLYLEFL 178


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +1

Query: 121 KVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVE 243
           K L + +      +   YYK+ K Y  +AN D     K VE
Sbjct: 89  KTLGVSKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFVE 129


>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
 Frame = +1

Query: 106 VERQKKVLSLFQDVDQVNVDDE-YYKIGKD-YD--VEANIDNYTNKKAVEEFL 252
           VER+K++ +L Q  D + ++DE YY +  D Y+   EA    +TN++ V+E +
Sbjct: 225 VERRKQIYTLAQKHDIIILEDEPYYYLQMDAYEGKPEAADKAFTNEQFVKELI 277


>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 9/30 (30%), Positives = 21/30 (70%)
 Frame = -1

Query: 621 ILLFLLYNSIINSLCIVKNTVLHFSAINLK 532
           ++LFL+Y S+++ L  +K  +L+ + + L+
Sbjct: 27  LILFLVYKSVLSKLFFIKYLMLNLTKVGLR 56


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = +1

Query: 502 PQFFVNMDTLLKIYRTKMQDGILHDAKAINYGIVQEEEQYVYYAHYSNTF 651
           P  F ++D L  +YR+K +D   HD K+    ++ EE+ Y+ ++ + + F
Sbjct: 116 PSQFSSID-LSWVYRSKEEDDDFHDPKSSVVSLMGEED-YLGWSRFCDLF 163


>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 274 DNRFCTISRILQQLSYWCSYRCW 206
           D +  T++++ + LS W  YR W
Sbjct: 239 DRKILTVNQVFEILSLWLEYRDW 261


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 139 QDVDQVNVDDEYYKIGKDYDVEANIDN 219
           Q+V Q+N +DEY +   + D EA IDN
Sbjct: 55  QNVMQMNFEDEYSEFSNE-DDEAEIDN 80


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 106 VERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLK 255
           + R+KK+L+L +  D + V+DE Y   +  D   +++    K     FLK
Sbjct: 224 LSRRKKLLALARKYDIIIVEDEPYYFLQMEDYNGSLNPAQQKCDGSTFLK 273


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 19  SSGAHCPRAIQCGVTENVSLQTKDVDAVFVERQKKVLSLF 138
           S  A+CP  ++   TE V   +KDVDA F    ++ ++ F
Sbjct: 287 SGNAYCPIDVETR-TERVHFISKDVDASFAIVSEEFVNRF 325


>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 202 EANIDNYTNKKAVEEFLKLYRIGYLPK 282
           E  + N+T ++A+EE  KL     LPK
Sbjct: 270 EERLTNFTEEEAIEECKKLNTKSMLPK 296


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +1

Query: 409 NEGQFL-YAYYIAVIQRNDTHG 471
           N G FL YA++  VI+  D+HG
Sbjct: 274 NSGSFLAYAFFSGVIEIYDSHG 295


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
            Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 557  KTVFFTMQRLLIM--ELYKRKSSMCITPTIPTL 649
            K+   T + LL++   LYK KSS+ +T  IP+L
Sbjct: 1076 KSDLLTKRNLLMICRVLYKAKSSLLVTLKIPSL 1108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,685,144
Number of Sequences: 5004
Number of extensions: 54697
Number of successful extensions: 170
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)