Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M15
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    28   0.93 
SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|ch...    27   2.8  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    27   2.8  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    27   2.8  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    26   3.7  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.9  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    26   4.9  
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    25   6.5  
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida...    25   6.5  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   6.5  
SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|c...    25   8.6  
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|...    25   8.6  

>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 332 NIEQPKGPDVSATTDIPNGFNDSISEVDNDKHYKPIR 442
           N++Q  G   S+ TD+P   ND I  + +D+   P R
Sbjct: 252 NVDQKSGFLTSSETDVPKNINDYIYLLIDDRFVPPDR 288


>SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 186

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 605 RHFYWVLSHLAVHIGTDVWICIRHWATGVPIDF 507
           R   W L++L    G+ +     HW TG P +F
Sbjct: 67  RELAWTLTNLTYMAGSFIMF---HWVTGTPFEF 96


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 7/25 (28%), Positives = 19/25 (76%)
 Frame = -2

Query: 602 HFYWVLSHLAVHIGTDVWICIRHWA 528
           +F +++  + +++GT+VW  ++HW+
Sbjct: 906 YFLFIIGGIGMNVGTNVW--LKHWS 928


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = +3

Query: 339 NSPKVPTYLQLPTSRMASTTAYPK--STTINITSLSGPVDSVDSGLKQEMFSNVAVSPKI 512
           NSP VP+   L  S   ST   P+  + + ++ S+S P     +      F+  A  P +
Sbjct: 139 NSPTVPSKFSLNPSVATSTNISPRRHAKSHSVASVSSP-----NSHNAVPFTPHAFVPPV 193

Query: 513 NRYAGRPVPNTYPHV 557
           N  +  P  NT P +
Sbjct: 194 NNASPLPALNTLPQL 208


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
 Frame = +3

Query: 345 PKVPTYLQLPTSRMASTTAYPKSTTINITSLSGPVDSVDSGLKQEMFSNVAVSPKINRYA 524
           P     + +PT+   +T  YP S T  +T        +D+ ++    +N   +     Y 
Sbjct: 191 PTTILIVTVPTTTTTTTVGYPGSVTTTLTGTPSNGTVIDT-VEVPTTTNYGYTTITTGYT 249

Query: 525 G-RPVPNTYPHVSTNMYGQVAEYPIEMP 605
           G   +  T PH S N  G    Y +E P
Sbjct: 250 GSTTLTTTVPH-SGNETGPTTVY-VETP 275


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/49 (28%), Positives = 19/49 (38%)
 Frame = +3

Query: 462 SGLKQEMFSNVAVSPKINRYAGRPVPNTYPHVSTNMYGQVAEYPIEMPL 608
           S L   +F+N   S   +      +P TYP  ST        YP   P+
Sbjct: 360 SSLSSSVFTNTTSS---SNSTNSSIPTTYPSNSTTYQNITTSYPWSQPV 405


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 329 HNIEQPKGPDVSATTDIPNGFNDSIS 406
           H+IE P  P +S  TDI + F+  IS
Sbjct: 480 HDIENPILPSLSMNTDIYDAFHPLIS 505


>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
 Frame = +3

Query: 339 NSPKVPTY----LQLPTSRMASTTAYPKSTTINITSLSGPVDSVDSGLKQEMFSNVAV-- 500
           N+   P+Y    LQLPT++ A +      +T N+TS +G   + DS      F  + +  
Sbjct: 149 NTAPFPSYSSNSLQLPTNQTADSPIINDHSTANVTS-TGQEHAPDSS-STNSFGGLLLPN 206

Query: 501 --SPKINRYAGRPVPNTYPHVSTN 566
             SPK +        NT P  S N
Sbjct: 207 QNSPKKSELGETESSNTTPANSRN 230


>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
           imidazole acetol phosphate transaminase
           His3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 333 ILNSPKVPTYLQLPTSRMASTTAYPKS 413
           I+NS K P  +  PTSR+A     P+S
Sbjct: 244 IMNSLKAPYNISEPTSRLALDALSPQS 270


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 351 VPTYLQLPTSRMASTTAYPKSTTINITSLSGP 446
           VPT+LQ+  S  AS+  +       +TS+ GP
Sbjct: 849 VPTFLQVMQSLSASSAEFYFQQLTTLTSIIGP 880


>SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 124

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 506 RAHSNVREHFLFKTRVYG 453
           R H +   H LF+TRVYG
Sbjct: 8   RKHHSNGNHALFRTRVYG 25


>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 403

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/56 (19%), Positives = 26/56 (46%)
 Frame = +3

Query: 339 NSPKVPTYLQLPTSRMASTTAYPKSTTINITSLSGPVDSVDSGLKQEMFSNVAVSP 506
           N+P+   + Q   SR  ++   P  +   + + + PVD  ++ +   +  +  +SP
Sbjct: 84  NAPQSTVFGQNAASRTGNSNTQPLFSWSTVNNPTKPVDETNATIPSSLLLSSGISP 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,421,071
Number of Sequences: 5004
Number of extensions: 48619
Number of successful extensions: 141
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)