Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M15
         (612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0091 + 22319411-22320901                                         31   0.95 

>05_05_0091 + 22319411-22320901
          Length = 496

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = +3

Query: 378 SRMASTTAYPKSTTINITSLSGPVDSVDSGLKQEMFSNVAVSPKINRYAGRPVPNTYPHV 557
           SR++    +P S      SLSGP+   D  L+ EM SN    P I  +  +P   + P V
Sbjct: 259 SRLSKLLLHPMSAAAQPRSLSGPIQRRDVPLRIEMSSNSC--PIIRSHCQQPWQTSPPGV 316


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,322,830
Number of Sequences: 37544
Number of extensions: 331683
Number of successful extensions: 934
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)