Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M15
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical...    30   1.1  
Z77657-6|CAB01150.2|  607|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z83316-8|CAB54186.1|  409|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z68335-3|CAA92730.2|  540|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U41108-3|AAK39157.2|  443|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical
            protein W03F11.4 protein.
          Length = 1406

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 22/78 (28%), Positives = 37/78 (47%)
 Frame = +2

Query: 191  PSGAPPRHHLAKEDQFDMKYVYIIAGISVVLLLCIIIGTVRCVMSRHNIEQPKGPDVSAT 370
            PS AP     ++E+        II  + VVL++ +I+  ++C+      E  + P VS  
Sbjct: 857  PSIAPSTTEASEEESSGSMLWIIIGAVVVVLIILVILLYLKCMRK----EPKEDPTVSIA 912

Query: 371  TDIPNGFNDSISEVDNDK 424
            T    G     S++D+DK
Sbjct: 913  TTTTTG---PESKIDDDK 927


>Z77657-6|CAB01150.2|  607|Caenorhabditis elegans Hypothetical
           protein F08H9.1 protein.
          Length = 607

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 17  EDEVAHDVSDLEHDDVDESNDR 82
           +  + HDVSD E +D DE  +R
Sbjct: 409 DSTIGHDVSDTEEEDEDEETER 430


>Z83316-8|CAB54186.1|  409|Caenorhabditis elegans Hypothetical
           protein B0379.7 protein.
          Length = 409

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +3

Query: 345 PKVPTYLQLPTSRMASTTAYPKSTTINITSLSG-PVDSVDSGLKQEMFSNVAVSPKINRY 521
           P+ PT +  P   +      P      +T+    PVD + S +K     +V ++PK N Y
Sbjct: 90  PQQPTQVSAPVQEITQGAPAPIPEPTPVTAEQPTPVDPLSSPIKPIGRDSVLLAPKDNVY 149

Query: 522 AG 527
            G
Sbjct: 150 GG 151


>Z68335-3|CAA92730.2|  540|Caenorhabditis elegans Hypothetical
           protein C29F4.2 protein.
          Length = 540

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +3

Query: 423 NITSLSGPVD-SVDSG--LKQEMFSNVAVSPKINRYAGRPVPNTYPHVSTNMYGQVAE 587
           N+T   G VD S D G  L+++MF N  VSP  +  A +   N Y   +TN   Q+ +
Sbjct: 314 NLTVAMGIVDDSHDDGPILEKDMFWNDTVSPLYSSAAAQRNVNFYFGSATNADAQIPD 371


>U41108-3|AAK39157.2|  443|Caenorhabditis elegans Hypothetical
           protein C08D8.1 protein.
          Length = 443

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 598 SIGYSATWPYILVLTCGYVLGTG 530
           ++GY    PYI +L CG++LG G
Sbjct: 325 ALGYILPSPYI-ILVCGFLLGVG 346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,662,870
Number of Sequences: 27780
Number of extensions: 280748
Number of successful extensions: 970
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)