Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M15
         (612 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35810.1 68418.m04303 hypothetical protein                          30   1.4  
At5g66770.1 68418.m08416 scarecrow transcription factor family p...    29   2.4  
At4g27070.1 68417.m03892 tryptophan synthase, beta subunit 2 (TS...    29   3.2  
At5g04960.1 68418.m00525 pectinesterase family protein contains ...    28   4.2  
At5g04500.1 68418.m00449 glycosyltransferase family protein 47 l...    28   4.2  
At3g51740.1 68416.m05673 leucine-rich repeat transmembrane prote...    28   4.2  
At3g62630.1 68416.m07035 expressed protein                             27   7.4  
At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearl...    27   7.4  
At5g13370.1 68418.m01540 auxin-responsive GH3 family protein sim...    27   9.8  

>At5g35810.1 68418.m04303 hypothetical protein
          Length = 347

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +2

Query: 14  EEDEVAHDVSDLEHDDVDESNDRWWIES 97
           +++EVAHD+   EHD++ +  ++W  E+
Sbjct: 153 KKEEVAHDLFTKEHDNLRKEGEKWMKET 180


>At5g66770.1 68418.m08416 scarecrow transcription factor family
           protein
          Length = 584

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -1

Query: 399 LSLKPFGMSVVADTSGPLGCSILCLLMTQRTVPMMIHSSNTTEIP 265
           LS++P  ++ V DTS PL    L    +  ++P + H S T E P
Sbjct: 157 LSVQPSDLNRVIDTSSPLPPPTLWPPSSPLSIPPLTHESPTKEDP 201


>At4g27070.1 68417.m03892 tryptophan synthase, beta subunit 2 (TSB2)
           identical to SP|25269
          Length = 475

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
 Frame = +3

Query: 336 LNSP-KVPTYLQLPTSRMASTTAYPKSTTINITSLSGPVDSVD---SGLKQEMFSNVAVS 503
           L SP K+P +  LP++R  S++++  S TI         DS     +G    M+      
Sbjct: 24  LRSPSKLPKFTPLPSARSRSSSSFSVSCTIAKDPAVVMADSEKIKAAGSDPTMWQRPDSF 83

Query: 504 PKINRYAGRPVPNTYPHVSTNM 569
            +  ++ G+ VP T  H  + +
Sbjct: 84  GRFGKFGGKYVPETLMHALSEL 105


>At5g04960.1 68418.m00525 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 564

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +2

Query: 245 KYVYIIAGISVVLLLCIIIGTVRCVMSRHNIEQP 346
           K + IIA IS ++L+CI++G V    +R N ++P
Sbjct: 23  KRIAIIA-ISSIVLVCIVVGAVVGTTARDNSKKP 55


>At5g04500.1 68418.m00449 glycosyltransferase family protein 47 low
           similarity to Exostosin-like 2, Homo sapiens
           [SP|Q9UBQ6], EXTL2, Mus musculus [GI:10443633]
          Length = 765

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 248 YVYIIAGISVVLLLCIIIGTVRCVM 322
           Y  + A ISVV+LL  ++G V C++
Sbjct: 398 YASLAAAISVVILLGFLLGVVNCIV 422


>At3g51740.1 68416.m05673 leucine-rich repeat transmembrane protein
           kinase, putative brassinosteroid-insensitive protein
           BRI1 - Arabidopsis thaliana, PIR:T09356
          Length = 836

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = +2

Query: 194 SGAPPRHHLAKEDQFDMKYVYIIAGISVVLLLCIIIGTVRCVMSRHNIEQPKGPDVSATT 373
           S  P +HH  K    D+  + I A ++++LLLC I+     +  R  ++Q  G D ++  
Sbjct: 443 SQEPRKHHHRKLSVKDVILIAIGALLAILLLLCCIL-LCCLIKKRAALKQKDGKDKTSEK 501

Query: 374 DIPNG 388
            +  G
Sbjct: 502 TVSAG 506


>At3g62630.1 68416.m07035 expressed protein
          Length = 380

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 426 ITSLSGPVDSVDSGLKQEMFSNVAVSP-KINRYAGRP 533
           ++S SGP+  V     +E+FSN  + P K++ +  RP
Sbjct: 88  LSSSSGPLGGVSMTSAEELFSNGQIKPMKLSSHLQRP 124


>At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearly
            identical to ubiquitin-protein ligase 2 [Arabidopsis
            thaliana] GI:7108523; E3, HECT-domain protein family;
            similar to ubiquitin-protein ligase 2 GI:7108523 from
            [Arabidopsis thaliana]
          Length = 3658

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 2    ESAPEEDEVAHDVSDLEHDDVDESND 79
            E   +EDE   D+ D + DD DE ND
Sbjct: 2176 EDEEDEDEYNDDMVDEDEDDEDEYND 2201


>At5g13370.1 68418.m01540 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 595

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 405 DMLSLKPFGMSVVADTSGPLGCSILCLLMTQRTV 304
           D L + P  ++  ADT+  + C +LC L+ +  V
Sbjct: 179 DSLQVSPHAITTCADTTQSMYCQLLCGLLERDNV 212


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,771,731
Number of Sequences: 28952
Number of extensions: 259153
Number of successful extensions: 753
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)