Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M13
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch...    25   6.8  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.0  
SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|ch...    25   9.0  

>SPAC4F10.18 |||WD repeat protein, human NUP37
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 476 YQMIINVKPYY*NWC 520
           YQ+ +NV+PY   WC
Sbjct: 8   YQLPLNVRPYTTTWC 22


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 275 HSPSPTFR-SVSLCSQL*LFMTQTLPKDFGFSPFLLAQ 165
           H   P F  + +L  QL +F   + PKD GFS  L +Q
Sbjct: 99  HPFYPVFEVNSNLYYQLLMFTNYSNPKDNGFSKLLFSQ 136


>SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 77

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 240 QRYTAESRRWRVCWFRRNSPLLI*TTKPQWNLS 338
           ++ T +   +R CW +R+ PL   + K   NLS
Sbjct: 45  RKCTEQMEEFRKCWEKRHGPLPSISDKKNKNLS 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,488,165
Number of Sequences: 5004
Number of extensions: 48147
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)