Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_M13
(630 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.021
SB_135| Best HMM Match : Kazal_1 (HMM E-Value=2.9e-19) 34 0.11
SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0) 31 0.58
SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19) 31 0.77
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 31 1.0
SB_3798| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_11826| Best HMM Match : Kazal_1 (HMM E-Value=1.2e-16) 30 1.3
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 29 3.1
SB_32965| Best HMM Match : Kazal_1 (HMM E-Value=3.4e-19) 29 3.1
SB_45996| Best HMM Match : VWA (HMM E-Value=2.6e-12) 28 7.2
SB_25624| Best HMM Match : PHD (HMM E-Value=1.3e-17) 28 7.2
SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_15403| Best HMM Match : CH (HMM E-Value=0) 27 9.5
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 36.3 bits (80), Expect = 0.021
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +1
Query: 124 ACLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGECAGSDGIRLS 303
+C DCTN + +PICAS +++ + C+M CE+ L D C D + L+
Sbjct: 2153 SCPDDCTN-ETKPICASDG----QTYDNECLMQKRACENNQNLNVTSDRACPCKDPVDLA 2207
>SB_135| Best HMM Match : Kazal_1 (HMM E-Value=2.9e-19)
Length = 92
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 127 CLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGEC 276
C CT + + P+C G K++G+ CV+ CE + ++ +GEC
Sbjct: 39 CNRACTKI-YRPVC----GTDGKTYGNKCVLEIATCESEGAVQLAHEGEC 83
>SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 293
Score = 31.5 bits (68), Expect = 0.58
Identities = 20/80 (25%), Positives = 35/80 (43%)
Frame = +1
Query: 46 VLLVAVSCRPDKPDLKQLKAEAARKKACLHDCTNVKFEPICASKNGEKPKSFGSVCVMNN 225
V +AV + LK A +R C C N ++P+C S N ++ + C++ +
Sbjct: 142 VFKIAVCQMNGQLRLKHRGACGSRPDKCAPIC-NKMYQPVCGSDN----VTYSNPCMLRS 196
Query: 226 YNCEHKDTLRKVGDGECAGS 285
C+ T+ G+C S
Sbjct: 197 ATCKSNGTITMKHRGKCGSS 216
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +1
Query: 127 CLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGECAGSDG 291
C+ C + + P+C G K++G+ C++ C T+ GEC G
Sbjct: 44 CVRPCPAI-YMPVC----GTDGKTYGNKCMLGAATCRSNGTITLAYPGECIVEKG 93
>SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)
Length = 173
Score = 31.1 bits (67), Expect = 0.77
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = +1
Query: 103 AEAARKKACLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGECAG 282
A+ +R C C N ++P+C S N ++ + C++ + C+ T+ G+C
Sbjct: 18 AKGSRPDKCAPIC-NKMYQPVCGSDN----VTYSNPCMLRSATCKSNGTITMKHRGKCGS 72
Query: 283 S 285
S
Sbjct: 73 S 73
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 151 KFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGEC 276
+ P+CAS +++ + CVM C K+++ K DG C
Sbjct: 893 ELRPVCASDG----RTYVNECVMRALACSRKESVNKTKDGAC 930
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 157 EPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGEC 276
+P+C S KS+GS C + CE K L V G+C
Sbjct: 1691 QPVCGSDG----KSYGSECELRKEACEAKIKLTLVSKGKC 1726
>SB_3798| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 351
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +1
Query: 76 DKPDLKQLKAEAARKKACLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLR 255
D D L+++ K C+ +C++ P G ++GS+C + C+ T+
Sbjct: 110 DVSDRTVLRSDQYNKSHCVSNCSSCNSSPADTEVCGADGVTYGSLCRLRVATCKLGKTIG 169
Query: 256 KVGDGEC-AGSD 288
G C GSD
Sbjct: 170 VAYLGSCKEGSD 181
>SB_11826| Best HMM Match : Kazal_1 (HMM E-Value=1.2e-16)
Length = 98
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +1
Query: 127 CLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGECA 279
C C + + P+C G K++G+ C++ CE + ++ +GEC+
Sbjct: 39 CNRACKKI-YSPMC----GTDGKTYGNKCMLEIATCESEGAVKLAHEGECS 84
>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2101
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 139 CTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGEC 276
CT + P+CAS +++ +VC M++ C+ L+ V +G C
Sbjct: 1817 CT-ADYSPVCASDG----QTYPNVCTMDSAGCQKSMNLKVVRNGTC 1857
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 154 FEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGEC 276
+ P+CAS K++ + M N CE LR V GEC
Sbjct: 1531 YTPVCASDG----KTYPNRMSMENAGCEKNMILRIVSQGEC 1567
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 11/65 (16%)
Frame = +1
Query: 127 CLHDCTNVKFEPICASKNG---EKPKS---FGSVCVMNNYNCEHKDTLRKV----GDGEC 276
C H CT + +P+C+ G E P + C + + CE +RK GD +C
Sbjct: 2134 CTHTCTVLDGKPVCSCPQGYRLENPYRCVLSNASCASSEFACESGQCVRKSFVCDGDNDC 2193
Query: 277 -AGSD 288
GSD
Sbjct: 2194 HDGSD 2198
>SB_32965| Best HMM Match : Kazal_1 (HMM E-Value=3.4e-19)
Length = 69
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +1
Query: 127 CLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGEC 276
C+ C + +P+C G K++G+ C++ C T+ GEC
Sbjct: 24 CVRPCPAIN-DPVC----GTDGKTYGNECMLGAATCHSNGTITLAYPGEC 68
>SB_45996| Best HMM Match : VWA (HMM E-Value=2.6e-12)
Length = 595
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 276 CWFRRNSPLLI*TTKPQWNLSLYIQNMTF 362
CW R N L K W L Y+ N+T+
Sbjct: 337 CWTRINGKLACTQVKCSWLLPTYVSNVTY 365
>SB_25624| Best HMM Match : PHD (HMM E-Value=1.3e-17)
Length = 1828
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 276 CWFRRNSPLLI*TTKPQWNLSLYIQNMTF 362
CW R N L K W L Y+ N+T+
Sbjct: 1234 CWTRINGKLACTQVKCSWLLPTYVSNVTY 1262
>SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2806
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 91 KQLKAEAARKKACLHDCTNVKFEPICASKNGEKPKS 198
K+ + ++A+KK+ T+ + P +K GE+P+S
Sbjct: 2572 KKKRPKSAQKKSSRQRTTSATYGPTVQAKEGERPQS 2607
>SB_15403| Best HMM Match : CH (HMM E-Value=0)
Length = 1907
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/58 (20%), Positives = 27/58 (46%)
Frame = +1
Query: 127 CLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGECAGSDGIRL 300
C C +V + P+C G+ +++ + C++ +C + ++ V G C + L
Sbjct: 973 CPRSCPSVNY-PVC----GDDGQTYDNECLLQLESCSRRRSITTVNYGSCGQQQPVHL 1025
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,234,688
Number of Sequences: 59808
Number of extensions: 357343
Number of successful extensions: 824
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -