Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M13
         (630 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79640.1 68414.m09286 protein kinase family protein contains ...    31   0.63 
At4g36080.1 68417.m05136 FAT domain-containing protein / phospha...    28   5.9  

>At1g79640.1 68414.m09286 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 694

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = +1

Query: 70  RPDKPDLKQLKAEAA--RKKACLHDCTNVKFEPICASKNGEKPKSFGSVCVMNN 225
           +P  P  ++   EAA  R+K  LHD T++++  ICA +  +K K+  +   M+N
Sbjct: 641 QPTVPPTEKSMLEAAHEREKELLHDITDLQWRLICAEEELQKYKTEHAQVSMSN 694


>At4g36080.1 68417.m05136 FAT domain-containing protein /
           phosphatidylinositol 3- and 4-kinase family protein
           contains Pfam profiles PF00454: Phosphatidylinositol 3-
           and 4-kinase, PF02259: FAT domain, PF02260: FATC domain
          Length = 3839

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 246 YTAESRRWRVCWFRRNSPLLI*TTKPQW 329
           +TAE   +  C+FR +S +L+  TKPQ+
Sbjct: 39  HTAEYLNFLKCYFRASSVILLQITKPQF 66


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,718,571
Number of Sequences: 28952
Number of extensions: 248924
Number of successful extensions: 499
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)