Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_M11
(379 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 27 1.3
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 27 1.3
SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3 |Sc... 26 2.3
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual 25 5.2
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 25 5.2
SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation protein... 24 6.9
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 24 6.9
SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyce... 24 9.1
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 24 9.1
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 24 9.1
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 26.6 bits (56), Expect = 1.3
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = +1
Query: 85 STQCLWSARKRFYPL--FQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVE 237
+T+ +W + L + + YYK+ K Y +AN D K VE
Sbjct: 77 ATRAVWEMTDPYKTLGVSKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFVE 129
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 26.6 bits (56), Expect = 1.3
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 133 QDVDQVNVDDEYYKIGKDYDVEANIDN 213
Q+V Q+N +DEY + + D EA IDN
Sbjct: 55 QNVMQMNFEDEYSEFSNE-DDEAEIDN 80
>SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 2.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 139 VDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLN 249
+D N+D E +G +Y + D Y K +VE FLN
Sbjct: 71 LDSSNID-EPPPVGLEYTRNCDCDQYCPKCSVELFLN 106
>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 304
Score = 24.6 bits (51), Expect = 5.2
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -1
Query: 268 DNRFCTSSRILQQLSYWCSYRCW 200
D + T +++ + LS W YR W
Sbjct: 239 DRKILTVNQVFEILSLWLEYRDW 261
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 24.6 bits (51), Expect = 5.2
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +1
Query: 214 YTNKKAVEEFLNLYRIGYLPKYYEFSIFYQKLREEAIALFHLFYY 348
Y + K + + ++ + + +YY FS F + ++ I F YY
Sbjct: 119 YVDYKHLTSYNDVLALAIVEQYYRFSPFLLRALQKLIEKFEPEYY 163
>SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 246
Score = 24.2 bits (50), Expect = 6.9
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +1
Query: 109 RKRFYPLFQDVDQVNVDDEY 168
R+R L ++++ N+DDEY
Sbjct: 189 RERLRSLADEIEEENIDDEY 208
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 24.2 bits (50), Expect = 6.9
Identities = 7/17 (41%), Positives = 14/17 (82%)
Frame = +1
Query: 133 QDVDQVNVDDEYYKIGK 183
Q+ + N+DDEY+++G+
Sbjct: 65 QEETETNLDDEYHRLGE 81
>SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 23.8 bits (49), Expect = 9.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 316 LPLAFGRRWRTHSTWEDNRFCTSSRILQQLSYWCSYRC 203
LP AF R H + E+ R + ++YWC Y C
Sbjct: 82 LPKAFQLRNEEHKSIEEER-------RRLMAYWCVYGC 112
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 23.8 bits (49), Expect = 9.1
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 208 DNYTNKKAVEEFLNLYRIGYLPKYYEFSIFYQKLREEAIALFHLFY 345
+ ++K +V E + Y L YY+ + + L + AL +LFY
Sbjct: 1386 EGLSSKPSVNETFSKYVFPVLFAYYDIIMSAEDLEVRSRALQNLFY 1431
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 23.8 bits (49), Expect = 9.1
Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 127 LFQ-DVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLNLYRIGYLPKY 279
L+Q DV +++ K+ N ++ +NK+ + +F N + +G L ++
Sbjct: 826 LYQNDVPHEKIENALRKVAMIVSQVVNDEDLSNKELLYDFFNNHILGILAEF 877
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,440,284
Number of Sequences: 5004
Number of extensions: 25893
Number of successful extensions: 85
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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