Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M11
         (379 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1654 - 28416487-28416548,28416791-28416824,28418156-284182...    30   0.53 
04_03_0062 - 10581175-10581879                                         28   2.8  
05_03_0263 + 11234850-11235044,11235413-11237341                       27   4.9  
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287...    27   6.5  
12_02_1118 + 26210322-26212559                                         26   8.6  
04_04_1392 + 33201015-33201600,33202030-33202406,33202528-332026...    26   8.6  
03_03_0140 + 14771293-14771821,14772343-14772455,14772723-147728...    26   8.6  
02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,323...    26   8.6  

>07_03_1654 -
           28416487-28416548,28416791-28416824,28418156-28418212,
           28418401-28418450,28418968-28419025,28419136-28419182,
           28419278-28419377,28419446-28419586,28419715-28419780,
           28420024-28420118,28420440-28420629
          Length = 299

 Score = 30.3 bits (65), Expect = 0.53
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +1

Query: 40  PVWCHRKRITSRQKMSTQCLWSARKRFYPLFQDVDQVNVDDEYYKIGKDYDVEANI 207
           P  C+ +R+ +  +MS +  WS       L  D+ +  V+D +YK G+  D++  I
Sbjct: 53  PASCYFRRVLAEGRMSRR--WSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKI 106


>04_03_0062 - 10581175-10581879
          Length = 234

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = +1

Query: 19  GSLPSC-NPVWCHRKRITSRQKMSTQCLWSARKRFYPLFQDVDQVNVDDEYYKIGKDYDV 195
           G LP C NP     +   SR++M  Q   + RKR  P   D D  + +D     G++   
Sbjct: 28  GELPPCANPHKTDDETGPSRKRMRGQVKLAPRKRRAPASSDSDADDEEDAEEHNGEEEGE 87

Query: 196 EANIDNYTNKKAVE 237
           E  ++    K   E
Sbjct: 88  EEEVEIVVEKTTGE 101


>05_03_0263 + 11234850-11235044,11235413-11237341
          Length = 707

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 7/26 (26%), Positives = 18/26 (69%)
 Frame = -2

Query: 285 LIVLGKITDSVQVQEFFNSFLIGVVI 208
           ++  G ITD++ +   F +F++G+++
Sbjct: 188 VLAAGFITDTIGIHALFGAFIVGIIV 213


>08_01_0321 +
           2872609-2873027,2873477-2873905,2874743-2874944,
           2875909-2875947,2876309-2876354,2877380-2877922,
           2878827-2880847,2880972-2881215,2881642-2881684,
           2881923-2881962,2883580-2883675,2883712-2883759,
           2883964-2884290
          Length = 1498

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -1

Query: 346 SRTSGKEQ*PLPLAFGRRWRTHSTWED 266
           SRT G    P P    RRWR H   +D
Sbjct: 404 SRTRGARNSPPPPTSARRWRPHPPADD 430


>12_02_1118 + 26210322-26212559
          Length = 745

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = -2

Query: 285 LIVLGKITDSVQVQEFFNSFLIGVVI 208
           ++  G +TD++ +   F +FL+G+ +
Sbjct: 213 VLAAGFVTDTIGIHALFGAFLVGIAV 238


>04_04_1392 +
           33201015-33201600,33202030-33202406,33202528-33202638,
           33202720-33202815,33202899-33203570
          Length = 613

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 321 SLFP*LLVEDGELIVLGKITDSVQVQEFFNSFLIGVVID 205
           S FP  + E GE+ V GK+ D +       SF + V ++
Sbjct: 500 SKFPSAISESGEITVEGKVKDGIPHLTKVGSFQVDVSLE 538


>03_03_0140 +
           14771293-14771821,14772343-14772455,14772723-14772830,
           14772931-14772973,14773454-14773593,14774216-14774446
          Length = 387

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 133 GKGDKTFFWRSTNTASTSFVLK*YVFGDTTLDCTRAMSPART 8
           G GD TFF    +++ + FVL    F +  L   R M P R+
Sbjct: 306 GDGDFTFFGLKQSSSLSDFVLAGEQFCNKDLSTLRKMYPNRS 347


>02_01_0451 -
           3237849-3238061,3238142-3238268,3238418-3238656,
           3238937-3239151,3239569-3240031,3240562-3240715,
           3241724-3241833,3242540-3242797,3242843-3242854,
           3243492-3243545,3244202-3244312,3244390-3244545,
           3244798-3245201,3245405-3245501,3246041-3246050,
           3246097-3246164,3246652-3246762,3246874-3247074,
           3247384-3247485,3247980-3248087,3248209-3248411,
           3248563-3248680,3248774-3248854,3248958-3249500,
           3249602-3249730
          Length = 1428

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -1

Query: 139 HLGKGDKTFFWRSTNTASTSFVLK*YVFGDTTLDCTRAMSPARTRT 2
           +L KG+  F    T+   T  V+  Y F   T  CTRA+  A  +T
Sbjct: 398 YLQKGESVFVAAHTSAGKT--VVAEYAFALATKHCTRAVYTAPIKT 441


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,010,258
Number of Sequences: 37544
Number of extensions: 159200
Number of successful extensions: 432
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)