Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M11
         (379 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36805| Best HMM Match : GED (HMM E-Value=0.24)                      28   2.2  
SB_9137| Best HMM Match : SCP (HMM E-Value=3.6e-18)                    28   2.2  
SB_10875| Best HMM Match : TIL (HMM E-Value=6.8)                       28   2.9  
SB_28721| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.8  
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)                  27   6.7  
SB_55816| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_58364| Best HMM Match : WD40 (HMM E-Value=2.8026e-45)               26   8.8  
SB_38521| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  

>SB_36805| Best HMM Match : GED (HMM E-Value=0.24)
          Length = 377

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 133 QDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLNLYRIGYLPKYY 282
           + V QV +  ++ K G+ +D   +I+N  ++K V  +L  Y      KYY
Sbjct: 49  EGVGQVVIHRKFMKPGELFDFPVSIENGKSRKFVSNWLKKYPWLAYSKYY 98


>SB_9137| Best HMM Match : SCP (HMM E-Value=3.6e-18)
          Length = 708

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 151 NVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLN 249
           N D+EY K   +Y+VE   D   N++A E  +N
Sbjct: 100 NDDEEYMKDMPEYNVETKADYKGNEEAAEWLMN 132


>SB_10875| Best HMM Match : TIL (HMM E-Value=6.8)
          Length = 62

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 41  QCGVTENVSLQDKRCRRSVCG 103
           +C + +NV   D+ CRRS CG
Sbjct: 29  KCHMEKNVIFDDRACRRSRCG 49


>SB_28721| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 247

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 136 DVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLNLYRIGY 267
           D D  N+DD+Y   G D D + N+D+       ++  NL  + Y
Sbjct: 186 DNDDNNLDDDYGTYGDDNDDDDNLDDVYYDAYCDDDDNLDDVNY 229


>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
          Length = 1093

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +3

Query: 3   VLVLAGLIALVQSSVVSPKTYHFKTKDVDAVFVERQ 110
           +++LA ++A V   +V+PK    K +D+D  ++E +
Sbjct: 618 LVILAMIVAAVVIIIVAPKCAKAKVRDMDKSWLENE 653


>SB_55816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 706

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 121 YPLFQDVDQVNVDDEYYKIGKDYDVEANIDN 213
           Y  + D D  + DD+ Y    DYDV  + DN
Sbjct: 665 YDDYDDYDDNDYDDDDYDDINDYDVNDDYDN 695


>SB_58364| Best HMM Match : WD40 (HMM E-Value=2.8026e-45)
          Length = 426

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 193 RHSPFQFCSIHHQR*LGLHLGKGDKTFFWRSTNTASTSFV 74
           R SPF+ C+    R +G H G     F ++  N+  T+FV
Sbjct: 124 RESPFRICTGSEDRTVGFHEG---PPFKFKHLNSEPTNFV 160


>SB_38521| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +1

Query: 49  CHRKRITSRQKMSTQCLWSARKRFYPL-FQDVDQVNVDDEYYKIGKDY 189
           C    +  R K   +C      ++YPL FQD      D   ++ GKDY
Sbjct: 235 CQVNTLLRRNKQLMECTTPLALKYYPLVFQDFS-ATADVLEFERGKDY 281


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,615,428
Number of Sequences: 59808
Number of extensions: 195834
Number of successful extensions: 626
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)