Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_M11
(379 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr... 31 0.21
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 29 1.1
U13019-5|AAC24444.1| 994|Caenorhabditis elegans Hypothetical pr... 28 2.5
Z78541-1|CAB01740.1| 452|Caenorhabditis elegans Hypothetical pr... 27 4.5
AF099919-4|AAC68791.1| 230|Caenorhabditis elegans Hypothetical ... 27 4.5
U80840-11|AAB37935.3| 392|Caenorhabditis elegans Hypothetical p... 26 7.8
U53155-4|AAC48265.1| 619|Caenorhabditis elegans Hypothetical pr... 26 7.8
U41994-2|AAO38634.1| 154|Caenorhabditis elegans Rnase h protein... 26 7.8
U41994-1|AAO91711.1| 155|Caenorhabditis elegans Rnase h protein... 26 7.8
>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
B0207.5 protein.
Length = 3279
Score = 31.5 bits (68), Expect = 0.21
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Frame = +1
Query: 28 PSCNPVWCHRKRITSRQKMSTQCLWSARKRFYPLFQDVDQVNVDDEYYKIGKD-----YD 192
P C+ V ++ + +C RK P +VD + DE Y++ K Y
Sbjct: 1203 PDCDDVDTNKMSEEEYRAYKKRC-GKERKTPKPDCDEVDVNKLSDEEYRLYKKRCMSTYT 1261
Query: 193 VEANIDNYTNKKAVEEFLNLYRIGYLPKYYEFSIFYQKLREEAIALF 333
E + N K E+ N+Y+I LPK E +K E + +F
Sbjct: 1262 PEDDCSNIRVKDLTEKEYNIYKIWDLPKLTEIFKNLKKKLEHSNPMF 1308
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
mutant phenotypeprotein 1 protein.
Length = 4177
Score = 29.1 bits (62), Expect = 1.1
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Frame = +1
Query: 136 DVDQVNVDDEYYKIGKDYDVEANIDNY----TNKKAVEEFLNLYR--IGYLPKY 279
DV ++++DD+Y+ +G +D + D + AV F +L+R +LP Y
Sbjct: 2546 DVQRLDLDDDYFDMGGPFDAQRMDDMIFPPSFGRPAVTSFADLFRDDFDFLPPY 2599
>U13019-5|AAC24444.1| 994|Caenorhabditis elegans Hypothetical
protein T12A2.5 protein.
Length = 994
Score = 27.9 bits (59), Expect = 2.5
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Frame = +1
Query: 124 PLFQDVDQ-VNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLNLYRIG--YL-PKYYEFS 291
PLFQD+D+ V D+ Y ++ + IDN A +F++ + G Y+ P F
Sbjct: 354 PLFQDLDKLVTTDESYQEVFLAMQMLLEIDNLDVINAKCQFIDSFYSGLEYIEPVIEAFG 413
Query: 292 IFYQKLRE 315
+ Q +R+
Sbjct: 414 VSTQDIRK 421
>Z78541-1|CAB01740.1| 452|Caenorhabditis elegans Hypothetical
protein F19D8.1 protein.
Length = 452
Score = 27.1 bits (57), Expect = 4.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 82 MSTQCLWSARKRFYPLFQDV 141
MST CL S R FYP F +
Sbjct: 1 MSTMCLRSTRNIFYPYFSPI 20
>AF099919-4|AAC68791.1| 230|Caenorhabditis elegans Hypothetical
protein F40G9.12 protein.
Length = 230
Score = 27.1 bits (57), Expect = 4.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 11 SSGAHCPRAIQCGVT 55
+SG HCPR + CG T
Sbjct: 28 TSGDHCPRVLSCGHT 42
>U80840-11|AAB37935.3| 392|Caenorhabditis elegans Hypothetical
protein F08D12.12 protein.
Length = 392
Score = 26.2 bits (55), Expect = 7.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 142 DQVNVDDEYYKIGKDYDVEANIDNYTNK 225
D+V+ DD + GKD + EA DN NK
Sbjct: 301 DEVSGDDWWTPCGKDDEEEAINDNQLNK 328
>U53155-4|AAC48265.1| 619|Caenorhabditis elegans Hypothetical
protein ZC513.3 protein.
Length = 619
Score = 26.2 bits (55), Expect = 7.8
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 292 WRTHSTWEDN-RFCTSSRILQQLSYWCSYRC 203
WRT + E + +F SRIL+Q + W S C
Sbjct: 542 WRTFAIREKSEKFPNVSRILRQKTSWVSKNC 572
>U41994-2|AAO38634.1| 154|Caenorhabditis elegans Rnase h protein
1.0, isoform b protein.
Length = 154
Score = 26.2 bits (55), Expect = 7.8
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +1
Query: 160 DEYYKIGKDYDVEANIDNYTNKKAVEEFLNLYRIGYLPKYYEFSIFYQKLREEAIALFHL 339
D YY + + + V +TN V+E + Y P + ++S EEAIA FH
Sbjct: 65 DTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKKWSTL-----EEAIAYFHK 112
Query: 340 FYYAKD 357
+Y K+
Sbjct: 113 YYEGKE 118
>U41994-1|AAO91711.1| 155|Caenorhabditis elegans Rnase h protein
1.0, isoform a protein.
Length = 155
Score = 26.2 bits (55), Expect = 7.8
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +1
Query: 160 DEYYKIGKDYDVEANIDNYTNKKAVEEFLNLYRIGYLPKYYEFSIFYQKLREEAIALFHL 339
D YY + + + V +TN V+E + Y P + ++S EEAIA FH
Sbjct: 65 DTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKKWSTL-----EEAIAYFHK 112
Query: 340 FYYAKD 357
+Y K+
Sbjct: 113 YYEGKE 118
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,914,321
Number of Sequences: 27780
Number of extensions: 144364
Number of successful extensions: 450
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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