Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_M11
(379 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g37610.1 68417.m05321 TAZ zinc finger family protein / BTB/PO... 30 0.44
At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly... 30 0.44
At5g40200.1 68418.m04878 DegP protease, putative contains simila... 29 1.0
At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative (CH... 29 1.4
At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative (CH... 29 1.4
At1g47350.1 68414.m05242 F-box family protein-related contains T... 27 3.1
At5g11310.1 68418.m01320 pentatricopeptide (PPR) repeat-containi... 27 4.1
At4g34200.1 68417.m04854 D-3-phosphoglycerate dehydrogenase, put... 26 7.2
At5g37620.1 68418.m04531 DC1 domain-containing protein contains ... 26 9.6
>At4g37610.1 68417.m05321 TAZ zinc finger family protein / BTB/POZ
domain-containing protein contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF02135 : TAZ zinc finger;
similar to Speckle-type POZ protein (SP:O43791) [Homo
sapiens]
Length = 368
Score = 30.3 bits (65), Expect = 0.44
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1
Query: 49 CHRKRITSRQKMSTQCLWSARKRFYPLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTN-K 225
CHR + + +++ST W A K +P Q +V E + + + I YT
Sbjct: 180 CHRMILNNFEEVSTSEGWQAMKESHPRLQKELLRSVAYELNSLKQRNRKQKEIQTYTQLY 239
Query: 226 KAVEEFLNLYRIG 264
+A+E F+++ R G
Sbjct: 240 EAMEAFVHICRDG 252
>At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly
identical to GI:9957293; contains Pfam profile: PF01397
terpene synthase family
Length = 591
Score = 30.3 bits (65), Expect = 0.44
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 139 VDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLNLYRIGYLPKYYEFSIFYQ 303
+DQ+ D+ K+G Y EA IDN ++ N+ EF +F Q
Sbjct: 96 LDQLEFIDDLQKLGVSYHFEAEIDNILTSSYKKDRTNIQESDLHATALEFRLFRQ 150
>At5g40200.1 68418.m04878 DegP protease, putative contains
similarity to DegP2 protease GI:13172275 from
[Arabidopsis thaliana]
Length = 592
Score = 29.1 bits (62), Expect = 1.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 151 NVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLNLYRI 261
N +DEY K DYD +D T K+A + L + I
Sbjct: 542 NCEDEYMKFNLDYDQIVVLDTKTAKEATLDILTTHCI 578
>At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative
(CHX18) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 742
Score = 28.7 bits (61), Expect = 1.4
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = -2
Query: 285 LIVLGKITDSVQVQEFFNSFLIGVVI 208
++V G ITD++ + F +F++GV+I
Sbjct: 204 VLVCGFITDAIGIHSMFGAFVVGVLI 229
>At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative
(CHX18) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 810
Score = 28.7 bits (61), Expect = 1.4
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = -2
Query: 285 LIVLGKITDSVQVQEFFNSFLIGVVI 208
++V G ITD++ + F +F++GV+I
Sbjct: 272 VLVCGFITDAIGIHSMFGAFVVGVLI 297
>At1g47350.1 68414.m05242 F-box family protein-related contains
TIGR01640: F-box protein interaction domain
Length = 528
Score = 27.5 bits (58), Expect = 3.1
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Frame = +1
Query: 115 RFYPLFQDVDQVNVDDEYYKIGKDY-DVEANIDNYTNK-----KAVEEFLNLYRIGYLPK 276
RFY L V+ +NV D K Y D N+++Y EE L Y Y P
Sbjct: 446 RFYALADHVEDINVIDSKLLKSKIYEDTYPNLEDYEQSDHDETSDDEESLRSYNYSYKPY 505
Query: 277 YY 282
Y
Sbjct: 506 MY 507
>At5g11310.1 68418.m01320 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 602
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 223 KKAVEEFLNLYRIGYLPKYYEFSIFYQKLREEAIA 327
++A EEF N R G +P+Y F + LR + ++
Sbjct: 477 EEAFEEFDNAVRRGIIPQYITFKMIDNGLRSKGMS 511
>At4g34200.1 68417.m04854 D-3-phosphoglycerate dehydrogenase,
putative / 3-PGDH, putative similar to phosphoglycerate
dehydrogenase, Arabidopsis thaliana, SP:O04130
Length = 603
Score = 26.2 bits (55), Expect = 7.2
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -2
Query: 363 SKVFSIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQVQEFFNSFLIGVVID 205
S + +I Q+ S F L E GE+ V GK+ D V SF + V ++
Sbjct: 476 SPLETITVQLSNVESKFASSLSESGEVKVEGKVKDGVPHLTKVGSFEVDVTLE 528
>At5g37620.1 68418.m04531 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 652
Score = 25.8 bits (54), Expect = 9.6
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 121 YPLFQDVDQVNVDDEYY 171
+PLF D++NVD EY+
Sbjct: 544 HPLFLSFDEMNVDGEYW 560
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,464,282
Number of Sequences: 28952
Number of extensions: 133519
Number of successful extensions: 383
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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