Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_M10
(321 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0042 + 295608-296222,298479-298925 29 1.1
02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303 28 1.9
08_02_0859 + 21960172-21961121,21961244-21961304,21961406-21962527 27 2.5
08_01_0843 - 8276619-8278991 27 4.3
09_03_0078 + 12137124-12137672 26 5.7
08_02_1605 - 28166338-28166418,28166496-28166567,28166655-281667... 26 5.7
02_01_0481 + 3459443-3460303 26 5.7
12_01_0317 + 2417147-2417587,2417622-2418134 26 7.6
08_01_0822 + 7976216-7978498,7978612-7978698,7979052-7979195 26 7.6
07_03_0161 - 14560287-14560426,14560467-14560707 26 7.6
04_04_1621 + 34842062-34842066,34842270-34842921 26 7.6
>02_01_0042 + 295608-296222,298479-298925
Length = 353
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 160 TDIIVQRKRANCSITAAARVTPIDSTLNLRVRKPATFTDLI 282
TD+ V R +TA AR P +S LNL R A F ++
Sbjct: 100 TDLAVTRGSDLAIVTAGARQIPGESRLNLLQRNVALFRKIV 140
>02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303
Length = 462
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -1
Query: 234 RIDWSYPCSRRNRTVRTFSLNYYIRNLGTLLCRYLCQSVVNILVRVL 94
R+ W P + + +T+ T ++N TL C +VV + RVL
Sbjct: 288 RLIWGPPGTGKTKTISTLLWAMLVKNHRTLTCAPTNTAVVEVASRVL 334
>08_02_0859 + 21960172-21961121,21961244-21961304,21961406-21962527
Length = 710
Score = 27.5 bits (58), Expect = 2.5
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +3
Query: 150 FPSYGYNSSTKTCELFYYGGCKGNSNRFD 236
FP GYN+ C FY G KGN FD
Sbjct: 536 FP-VGYNNPVMFCGKFYCLGRKGNLGAFD 563
>08_01_0843 - 8276619-8278991
Length = 790
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +3
Query: 135 TCRAEFPSYGYNSSTKTCELFYYGGCKGNSNRFDTQL 245
+C F N ST+ C GGC GNS D L
Sbjct: 317 SCLPGFEFLSANQSTQGCWRAQTGGCTGNSPNGDIGL 353
>09_03_0078 + 12137124-12137672
Length = 182
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +1
Query: 136 PAEQSSQVTDIIVQRKRANCSITAAARVTPIDSTLNLRVRKPA 264
P + ++ T + +Q +RA +++ A D+ L +RVR+PA
Sbjct: 89 PPSRRAESTRLFLQLRRAYETLSDPALRVRYDAELMMRVRRPA 131
>08_02_1605 - 28166338-28166418,28166496-28166567,28166655-28166771,
28166846-28166956,28167077-28167252,28167340-28167421,
28167662-28167808,28167887-28168252,28168558-28168741,
28169104-28169213,28169452-28169508,28169589-28169600,
28169899-28169961,28170010-28170057,28170166-28170246,
28170326-28170389,28170661-28170686,28170782-28170868,
28170942-28170969,28171194-28171255,28171364-28171576,
28171667-28171774,28171948-28172022,28172136-28172249,
28172597-28172644,28172688-28172767,28172974-28173049,
28173287-28173427,28173685-28173762,28175100-28175204,
28177061-28177147,28177287-28178579
Length = 1463
Score = 26.2 bits (55), Expect = 5.7
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +3
Query: 165 YNSSTKTCELFYYGGCKGNSNRFDTQLACEE 257
++ TCE FY C N+ + L C+E
Sbjct: 991 HDGQAVTCEDFYAAMCDANNTQLPNFLQCQE 1021
>02_01_0481 + 3459443-3460303
Length = 286
Score = 26.2 bits (55), Expect = 5.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 124 LTKVPAEQSSQVTDIIVQRKRANCSITAAARVTPID 231
L +V AE S +V DIIV+ + + AAA ID
Sbjct: 165 LQRVQAEASERVHDIIVEEAMTHYTGAAAAAANLID 200
>12_01_0317 + 2417147-2417587,2417622-2418134
Length = 317
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +1
Query: 166 IIVQRKRANCSITAAARVTPIDSTLNLRVRKP--ATFTDL 279
++V+R+R +CS+ ++ ++S L P A F DL
Sbjct: 92 VLVRRRRGSCSVLSSGEDEAVESESELSASSPRLALFWDL 131
>08_01_0822 + 7976216-7978498,7978612-7978698,7979052-7979195
Length = 837
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 135 TCRAEFPSYGYNSSTKTCELFYYGGCKGNSNRFD 236
+C F N +T+ C GGC GNS+ D
Sbjct: 317 SCLPGFEFSSANQTTQGCWRVRTGGCTGNSSNGD 350
>07_03_0161 - 14560287-14560426,14560467-14560707
Length = 126
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = +1
Query: 85 AVLKNPHQNVYNRLTKVPAEQSSQVTDIIVQRKRANCSI 201
++ + PH N + R T E ++VT ++ NC +
Sbjct: 77 SIAQGPHHNYFVRATHKTIENKNEVTIWVMSNACKNCRL 115
>04_04_1621 + 34842062-34842066,34842270-34842921
Length = 218
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 267 RCRLPHTQVECRIDWSYPCSRRNRT 193
+CR+P++ VE I Y C NR+
Sbjct: 133 KCRVPNSLVEVMITQPYKCVDHNRS 157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,916,270
Number of Sequences: 37544
Number of extensions: 143728
Number of successful extensions: 310
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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