Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M10
         (321 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17260.1 68417.m02595 L-lactate dehydrogenase, putative stron...    28   1.2  
At3g12040.1 68416.m01494 DNA-3-methyladenine glycosylase (MAG) i...    28   1.6  
At5g56160.1 68418.m07006 SEC14 cytosolic factor family protein /...    27   2.1  
At5g10230.1 68418.m01187 annexin 7 (ANN7) nearly identical to ca...    26   6.5  
At3g54590.1 68416.m06040 proline-rich extensin-like family prote...    26   6.5  
At3g29185.1 68416.m03658 expressed protein                             25   8.6  
At2g43990.1 68415.m05470 expressed protein                             25   8.6  

>At4g17260.1 68417.m02595 L-lactate dehydrogenase, putative strong
           similarity to L-lactate dehydrogenase from Lycopersicon
           esculentum (GI:1620970, GI:1620972), Hordeum vulgare
           (SP|P22988, SP|P22989); contains InterPro entry
           IPR001236: Lactate/malate dehydrogenase
          Length = 353

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 193 CSITAAARVTPIDSTLNLRVRKPATFTDLI 282
           C +TA AR  P +S LNL  R  A F  +I
Sbjct: 112 CIVTAGARQNPGESRLNLLQRNVALFRHII 141


>At3g12040.1 68416.m01494 DNA-3-methyladenine glycosylase (MAG)
           identical to DNA-3-methlyadenine glycosylase (MAG)
           SP:Q39147 from [Arabidopsis thaliana]; contains Pfam
           profile: PF02245 methylpurine-DNA glycosylase (MPG)
          Length = 254

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +1

Query: 145 QSSQVTDIIVQRKRANCSITAAARVTP 225
           +++  T ++++ ++ NCS T AARV P
Sbjct: 17  ETNVTTRVVLRTRKTNCSKTRAARVRP 43


>At5g56160.1 68418.m07006 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein similar to
           similar to phosphatidylinositol transfer-like protein IV
           (GI:14486707) [Lotus japonicus] and SEC14 cytosolic
           factor (SP:P45816) [Candida lipolytica]
          Length = 592

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +1

Query: 172 VQRKRANCSITAAARVTPIDSTLNLRVRKPATFTDLI*NL---IGELSCNY 315
           +Q K   CS+ A  RVT   + L++       FT    NL   I ++ CNY
Sbjct: 207 LQEKLPACSVAAKRRVTTTTTILDVEGLGMKNFTPTAANLLATIAKVDCNY 257


>At5g10230.1 68418.m01187 annexin 7 (ANN7) nearly identical to
           calcium-binding protein annexin 7 [Arabidopsis thaliana]
           GI:12667522
          Length = 316

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -1

Query: 204 RNRTVRTFSLNYYIRNLGTLLCRYLCQSVVNILVRVL 94
           R++   + +LN+Y  N GT + +YL +   N  +++L
Sbjct: 196 RSKAQISATLNHYKNNFGTSMSKYLKEDSENEYIQLL 232


>At3g54590.1 68416.m06040 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 743

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 72  HTVICSVKEPAPECLQPIDKGTCRAEFPSYGYNS 173
           H  +C V  P P C  P  K   ++  P Y YNS
Sbjct: 664 HPHVC-VCPPPPPCYSPSPKVVYKSPPPPYVYNS 696


>At3g29185.1 68416.m03658 expressed protein
          Length = 433

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 32  MSKCVILLSYFHCSYCYLQ 88
           +SKCV  L  FH  +C+L+
Sbjct: 386 VSKCVADLKSFHLEFCWLE 404


>At2g43990.1 68415.m05470 expressed protein
          Length = 632

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
 Frame = +3

Query: 114 LQPID--KGTCRAEFPSYGYNSSTKTCELFYYGGCKGNSNRFDTQLACE 254
           L P+D  K T R    S   N   +     +   C G ++ FDT   CE
Sbjct: 387 LSPMDIYKETTRRISSSLSPNELFRFRRFIHLSSCDGEASAFDTSPTCE 435


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,453,120
Number of Sequences: 28952
Number of extensions: 116686
Number of successful extensions: 276
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 350523880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)