Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M09
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual    29   0.57 
SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.3  
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po...    27   2.3  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   4.0  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    26   5.3  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    26   5.3  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    25   7.0  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    25   9.2  

>SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = +3

Query: 48  MAFERFRTQSDNSSGGTTASGRLRSQFPSSP-RHRSALRDNQTIPRSRRKC**GRNVTSR 224
           ++F+R    +++     +AS +L S  PSSP R  SA  D Q+     R    G+N    
Sbjct: 204 LSFKRLVKNANSPVAPPSASSQLNSSNPSSPFRPLSASTDKQSNTSLNRVL--GKNRMPE 261

Query: 225 PYTIKGRGSVGIFQTRH 275
             T K   +VG++  ++
Sbjct: 262 TQTTKKLDNVGLYNMQN 278


>SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 120

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
 Frame = +1

Query: 43  SVWPLRDFERKAIIAAGELQPQVGCGVSFHPHRDIEAPFEIIRLYLEA---GGSADKVVM 213
           S W L+DF  + +   GE +  V C       + I + F I   +L      GSA+ + +
Sbjct: 25  SHWKLKDFSFRFLRMCGE-RSLVVC-YPLKLLKQIRSLFSIAIGHLSLMLIEGSANLLSL 82

Query: 214 SHLDRTLLKDEDLLEFSKLGTYCQFDLFGVEVSYYQMRPD 333
             + RTLL+  D +    + TY +  L    +S  Q RP+
Sbjct: 83  EEISRTLLRILDFVGNKNMRTYLEVPLCRWHIS--QARPN 120


>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 207 DLISTSSGFEV*SDYLEGRFDVAVRMET 124
           D I  S+ FEV + YLE +FD A+  E+
Sbjct: 89  DKIDNSASFEVVTHYLESQFDQALIEES 116


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 210 NVTSRPYTIKGRGSVGIFQTRHILPVRFI-WR*SVLLPDETGHRHALGRTA 359
           N  +R YTI+ RG    F+   I+P      R SV++ DE G  H + + A
Sbjct: 740 NTKNRRYTIRIRGENKNFRVLDIIPFTSTRKRMSVIIRDEDGIIHLICKGA 790


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 106 QVGCGVSFHPHRDIEAPFEIIRLYLEAGGSADKVVMS 216
           QV C  S  PH+D+     ++ LY   GG+    + S
Sbjct: 485 QVSCQASV-PHQDLAIASSLLPLYTNIGGAIGAAIAS 520


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 12/134 (8%)
 Frame = +1

Query: 127 FHPHRDIEAPFEIIRLYLEAGGSADKVVMSHLDRTLLKDEDLLEFSKLGTYCQFDLFGVE 306
           F PHRDI   F++    L  G   D+          +KD + +   +   + QF     +
Sbjct: 434 FPPHRDIHQTFDLKGSTL--GRELDENQPCQSPMCTMKDTNWI---RRNMHLQFGPLKRQ 488

Query: 307 VSYYQMRPDTDMPSDGQRLDKVKLL----VDEGKADK----ILMSHDIH-TKHRLTHFGG 459
           +   Q++ D DM S    +D   L+    +  G  DK    IL  +D + ++HR+    G
Sbjct: 489 IFLTQVKADIDMLSSLGIMDYSLLVGIHDLSRGNRDKIRNSILSVYDPNVSQHRVPSING 548

Query: 460 ---HGYSHIINNVL 492
              H   H+I  V+
Sbjct: 549 NESHSNVHVIRQVV 562


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +1

Query: 418 HDIHTKHRLTHFGGHGYSH 474
           HDI   HRLT FGG G  H
Sbjct: 488 HDISI-HRLTSFGGAGGQH 505


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/41 (29%), Positives = 15/41 (36%)
 Frame = -1

Query: 367 CPDAVRPRACRCPVSSGSKTLQRQINRTGSMCLVWKIPTDP 245
           C D        CP SS       Q+N  G + + W    DP
Sbjct: 31  CTDNSNVELSSCPDSSFDDEKTNQVNSEGLIIVTWDGEDDP 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,634,105
Number of Sequences: 5004
Number of extensions: 54150
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)