Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_M09
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0981 + 29912275-29912814 33 0.25
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 31 0.58
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 31 0.77
07_03_1257 - 25241194-25242018 30 1.8
05_04_0013 + 17161500-17162021 30 1.8
02_02_0484 - 10848574-10848720,10848995-10849150,10849158-10849535 29 2.4
03_02_0917 + 12372122-12372422,12372487-12372524,12373103-123731... 29 4.1
06_03_0077 + 16284106-16284128,16284552-16284795,16285490-162855... 28 5.4
01_03_0224 + 13940419-13941786 28 5.4
11_01_0737 + 6211149-6211466,6212022-6212183,6212290-6213101,621... 28 7.2
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757... 28 7.2
07_03_1693 - 28756331-28756435,28756558-28756664,28757114-287572... 27 9.5
06_03_1262 - 28824736-28824906,28825297-28825371,28825530-288256... 27 9.5
02_05_1338 + 35790726-35791862 27 9.5
01_01_0012 + 71903-72935,73468-73981,74619-76008 27 9.5
>04_04_0981 + 29912275-29912814
Length = 179
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -1
Query: 409 GSCPLYPRPRGV*PCPDAVRPRACRCPVSSGSKTLQRQINRTGSMCLVWKI 257
G CP R R + CP+ R C C SS S + +GS +V ++
Sbjct: 18 GVCPYCLRDRLLRLCPECAHARPCPCAASSSSPSSSSSSAASGSAAVVGRV 68
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 31.5 bits (68), Expect = 0.58
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +1
Query: 139 RDIEAPFEIIRLYLEAGGSADKVVMSHLDRTLLKDEDLLEFSKL 270
R +E P+ I++ G K S L T +K+ED LEFSK+
Sbjct: 167 RKMEVPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKI 210
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 31.1 bits (67), Expect = 0.77
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +1
Query: 139 RDIEAPFEIIRLYLEAGGSADKVVMSHLDRTLLKDEDLLEFSKL 270
R +E P+ I++ G K S L T +K+ED LEFSK+
Sbjct: 152 RKMEIPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKI 195
>07_03_1257 - 25241194-25242018
Length = 274
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -1
Query: 400 PLYPRPRGV*PCPDAVRPRACRCPVS--SGSKTLQRQINRTGSMC 272
PL PRPR P P AVR R+ + P +G + + T S C
Sbjct: 29 PLQPRPRSPRPMPQAVRHRSLQPPAPDVAGRDSTPSPASMTPSRC 73
>05_04_0013 + 17161500-17162021
Length = 173
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 103 PQVGCGVSFHPHRDIEAPFEI 165
PQ GCG H HRD+ P +
Sbjct: 142 PQCGCGFDCHDHRDLSLPLPL 162
>02_02_0484 - 10848574-10848720,10848995-10849150,10849158-10849535
Length = 226
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 297 WR*SVLLPDETGHRHALGRTASGQGQTPRGR 389
WR + D+ G H+L T GQ Q P G+
Sbjct: 15 WRAAAAATDKGGEGHSLAATGDGQEQWPHGK 45
>03_02_0917 +
12372122-12372422,12372487-12372524,12373103-12373186,
12373796-12374504,12374641-12374729,12374834-12374903,
12374977-12375060,12375097-12375239,12375337-12375418,
12375605-12375687,12375769-12375835,12376287-12376376,
12377631-12377737,12377862-12377969
Length = 684
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -1
Query: 412 SGSCPLYPRPRGV*PCPDAVRPRACRCPVSSGSK 311
+G C R V C D R R C CPV G K
Sbjct: 491 NGGC-WQDRDNNVTACKDTFRGRVCECPVVKGVK 523
>06_03_0077 +
16284106-16284128,16284552-16284795,16285490-16285591,
16286347-16287057
Length = 359
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 148 EAPFEIIRLYLEAGGSADK 204
EAPFE+ LY+E G + DK
Sbjct: 71 EAPFELNHLYVEMGSAGDK 89
>01_03_0224 + 13940419-13941786
Length = 455
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/65 (21%), Positives = 30/65 (46%)
Frame = -2
Query: 549 VYGDLINNSFGDSLSLHSG*NVVNDVGIPVPAEMRQSVFSMNIMGHQDLVRFTLVHEEFD 370
+ G +N+S D++ + N V D+ +PA + +S ++ + H E+D
Sbjct: 169 IVGTAVNHSVCDAMGIVQFLNAVADIAGGLPAPAVHATWSRELLDARSPPAPAFPHREYD 228
Query: 369 LVQTL 355
++ L
Sbjct: 229 MIDIL 233
>11_01_0737 +
6211149-6211466,6212022-6212183,6212290-6213101,
6213188-6213395,6214157-6214364,6214752-6215206,
6215585-6216011,6216391-6216471,6216571-6216761,
6216855-6216998
Length = 1001
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +1
Query: 16 KAGFMGEIASVWPLRDFERKAIIAAGEL-----QPQVGCGVSFHPHRDIEAPFE 162
+AG IA V+P R+ ++ I + +L P VGC + F P +AP E
Sbjct: 145 EAGRNFVIAKVFPSREVQKNGIKLSWDLACSLGNPSVGCSLFFSPLYTSQAPKE 198
>02_05_0672 +
30775458-30775523,30775594-30775662,30775748-30775797,
30775869-30775929,30776016-30776381,30776542-30776754,
30776826-30777056,30777502-30777615,30777703-30778495,
30778535-30778905,30779007-30779378,30779448-30780438,
30781068-30781141,30781953-30782030,30782448-30782525
Length = 1308
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 81 NSSGGTTASGRLRSQFPSSPRHRSALRDNQTIPRSRR 191
+S G T G+ +Q+P SPRH L I S+R
Sbjct: 807 DSKGEPTLMGKAMAQYPMSPRHSRLLLTIVKILNSQR 843
>07_03_1693 -
28756331-28756435,28756558-28756664,28757114-28757245,
28757412-28757478,28757553-28757635,28757824-28757905,
28763101-28763177,28763278-28763361,28763443-28763512,
28763625-28763713,28763801-28764487,28765700-28765997
Length = 626
Score = 27.5 bits (58), Expect = 9.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -1
Query: 367 CPDAVRPRACRCPVSSGSK 311
C D R R C CP++ G K
Sbjct: 434 CKDTFRGRVCECPIARGVK 452
>06_03_1262 -
28824736-28824906,28825297-28825371,28825530-28825621,
28825741-28825827,28826049-28826207,28826314-28826412,
28826528-28826655,28827066-28827238
Length = 327
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 75 SDNSSGGTTASGRLRSQFPSSPRHRSALRD 164
S S GG +A+G+ + SSP RS++ D
Sbjct: 50 SPGSGGGFSANGKFSYGYASSPGKRSSMED 79
>02_05_1338 + 35790726-35791862
Length = 378
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 128 KLTPQPT*GCSSPAAIIALRSKSLKGHTLAI 36
+L+ P C+ AAI ALR+ +K H ++I
Sbjct: 114 RLSRDPLRNCAGVAAIAALRALDVKSHAVSI 144
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 66 RTQSDNSSGGTTASGRLRSQFPSSPRHRSALRDNQTIPRSRRK 194
R +SD S ++S R SPRH+ + R + P+ R+
Sbjct: 585 RRESDRSRDHYSSSSRRNRSRSISPRHKKSSRSDSRSPKRHRE 627
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,633,671
Number of Sequences: 37544
Number of extensions: 385604
Number of successful extensions: 1029
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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