Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M09
         (640 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37671| Best HMM Match : No HMM Matches (HMM E-Value=.)             155   2e-38
SB_43869| Best HMM Match : ig (HMM E-Value=2.7e-06)                    31   0.79 
SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31)                   29   4.2  
SB_32468| Best HMM Match : Drf_FH1 (HMM E-Value=2.6)                   29   4.2  
SB_29191| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_13949| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_44622| Best HMM Match : dsrm (HMM E-Value=3.1e-16)                  28   7.4  
SB_11123| Best HMM Match : RVT_1 (HMM E-Value=3.4e-27)                 28   7.4  
SB_21871| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_46201| Best HMM Match : WD40 (HMM E-Value=0)                        27   9.7  

>SB_37671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score =  155 bits (377), Expect = 2e-38
 Identities = 73/168 (43%), Positives = 102/168 (60%)
 Frame = +1

Query: 1   EDTSVKAGFMGEIASVWPLRDFERKAIIAAGELQPQVGCGVSFHPHRDIEAPFEIIRLYL 180
           E T++K G +GE+   WPL   E+K++ A+   Q + G  +  HP RD  AP EIIR+  
Sbjct: 159 EGTNIKCGVIGEVGCSWPLTPIEKKSLQASAAAQAETGAPLIIHPGRDESAPEEIIRILQ 218

Query: 181 EAGGSADKVVMSHLDRTLLKDEDLLEFSKLGTYCQFDLFGVEVSYYQMRPDTDMPSDGQR 360
           EAGG   + VMSH DRT+     L+E +  G Y ++DLFG+E  +YQ    +DMPSD QR
Sbjct: 219 EAGGDISRTVMSHTDRTIFNRSKLVELAATGCYVEWDLFGMETLFYQANLASDMPSDSQR 278

Query: 361 LDKVKLLVDEGKADKILMSHDIHTKHRLTHFGGHGYSHIINNVLPRMK 504
           +  +K L+DEG  DKI+++HDIHT+HRL  +      + I  VL   K
Sbjct: 279 IQDIKFLLDEGYEDKIVIAHDIHTRHRLKKYECFAIRNGIQVVLQAFK 326


>SB_43869| Best HMM Match : ig (HMM E-Value=2.7e-06)
          Length = 399

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = -1

Query: 226 GRDVTLRPYQHFLRLRGIV 170
           G +++LRPYQ+ LRLRG+V
Sbjct: 163 GVELSLRPYQYVLRLRGVV 181


>SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31)
          Length = 870

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/68 (23%), Positives = 31/68 (45%)
 Frame = -1

Query: 349 PRACRCPVSSGSKTLQRQINRTGSMCLVWKIPTDPRPLIVYGRDVTLRPYQHFLRLRGIV 170
           PR C C V    +T+    +  G   L +K+P     + + G  +   P++H+L    ++
Sbjct: 485 PRECTCAVREIDQTVLVDCSERGLHRLPFKMPAGELEVNLRGNAIRELPWRHYLGNITVL 544

Query: 169 *LSRRALR 146
            LS   ++
Sbjct: 545 ELSNNEIK 552


>SB_32468| Best HMM Match : Drf_FH1 (HMM E-Value=2.6)
          Length = 416

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
 Frame = -1

Query: 457 RRNASVGV*YEYHGTSGSCPLYPRPRGV*PCPDAVRPRACRCP-VSSGSKTLQRQINRTG 281
           +R  SV   Y     S  CP   R   V PCP   RP +  CP V+         +NRT 
Sbjct: 284 KRPVSVPCPYVNRAVSVPCPYVNRAVSV-PCPYVKRPVSVPCPYVNRAVSVPCPYVNRTV 342

Query: 280 SM-CLVWKIPTD-PRPLI 233
           S+ C   K P   P P +
Sbjct: 343 SVPCPYVKRPVSVPCPYV 360



 Score = 27.9 bits (59), Expect = 7.4
 Identities = 26/77 (33%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
 Frame = -1

Query: 454 RNASVGV*YEYHGTSGSCPLYPRPRGV*PCPDAVRPRACRCP-VSSGSKTLQRQINRTGS 278
           R  SV   Y     S  CP   R   V PCP   RP +  CP V+         +NRT S
Sbjct: 21  RAVSVPCPYVNRAVSVPCPYVNRAVSV-PCPYVKRPVSVPCPYVNRAVSVPCPYVNRTVS 79

Query: 277 M-CLVWKIPTD-PRPLI 233
           + C   K P   P P +
Sbjct: 80  VPCPYVKRPVSVPCPYV 96


>SB_29191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +1

Query: 229 TLLKDEDLLEFSK-LGTYC-QFDLFGVEVSYYQMRPDTDMPSDGQRLDKVKLLVD 387
           T+L  +D++ F   LG  C +++LF V+ S  +    TD+      + K+K + D
Sbjct: 55  TVLGTDDVIGFEDYLGAMCVKYELFDVDTSRMRFVAKTDIGCQSSAIKKIKEMFD 109


>SB_13949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 867

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 21/64 (32%), Positives = 30/64 (46%)
 Frame = -1

Query: 370 PCPDAVRPRACRCPVSSGSKTLQRQINRTGSMCLVWKIPTDPRPLIVYGRDVTLRPYQHF 191
           P P   + R C   V   ++ L+ Q        LV  IP+  + LI+ G    LRP  HF
Sbjct: 473 PIPPEQQIRPCVMIVEEAAEILEPQ--------LVSVIPSCTQHLIMIGDHQQLRPQVHF 524

Query: 190 LRLR 179
           ++LR
Sbjct: 525 IKLR 528


>SB_44622| Best HMM Match : dsrm (HMM E-Value=3.1e-16)
          Length = 724

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 424 YHGTSGSCPLYPRPRGV*PCPDAVRPRACRCPVSSG 317
           YH  SGS   +  P    PC   +R  AC+ P  SG
Sbjct: 82  YHIGSGSVRKHDIPAAAIPCFHQMRSLACQSPEDSG 117


>SB_11123| Best HMM Match : RVT_1 (HMM E-Value=3.4e-27)
          Length = 1154

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 157 FEIIRLYLEAGGSADKVVMSHLDRTLLKDEDLLEFSKLGTY 279
           FE I   L  G    K+ MSH  + LL DE+  ++  + T+
Sbjct: 339 FEDISAKLATGSKFSKLDMSHAHQQLLLDEESAKYVTINTH 379


>SB_21871| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -2

Query: 633 QLKKTRKLRYIINAQRRLIVNRKPSRWXVYGDLINN 526
           QL ++ +++Y+++A  R   N++PSR  +     NN
Sbjct: 221 QLSQSSRVQYLLHAHARTCANQRPSRQKLKTSARNN 256


>SB_46201| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 292

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 379 LVDEGKADKILMSHDIHTKHRLTHFGGHGYSHIINNVLPRM 501
           L+  G +D  + S D+HT   L  F GH  S I   V+ ++
Sbjct: 211 LLFTGSSDSTIRSWDLHTYSPLKSFKGHSASVICIQVVNKL 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,970,035
Number of Sequences: 59808
Number of extensions: 438393
Number of successful extensions: 1045
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)