Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M09
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69793-7|CAA93676.3|  527|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z69791-7|CAA93663.3|  527|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z49888-2|CAA90061.1| 1071|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical pr...    28   6.5  

>Z69793-7|CAA93676.3|  527|Caenorhabditis elegans Hypothetical
           protein F39D8.4 protein.
          Length = 527

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 113 PT*GCSSPAAIIALRSKSLKGHTLAISP 30
           PT GC SP  +  L S +   HTL++ P
Sbjct: 52  PTAGCPSPPFLFLLSSSTDSSHTLSLMP 79


>Z69791-7|CAA93663.3|  527|Caenorhabditis elegans Hypothetical
           protein F39D8.4 protein.
          Length = 527

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 113 PT*GCSSPAAIIALRSKSLKGHTLAISP 30
           PT GC SP  +  L S +   HTL++ P
Sbjct: 52  PTAGCPSPPFLFLLSSSTDSSHTLSLMP 79


>Z49888-2|CAA90061.1| 1071|Caenorhabditis elegans Hypothetical protein
            F47A4.5 protein.
          Length = 1071

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +1

Query: 409  LMSHDIHTKHRLTHFGGHGYSHIINNVLPRMKTKGIPERIIDQITIDXPARWLSIDN*PS 588
            LMS ++H  +R     G     +  NVL    T  IP  +I+ ++ID  +   SI    +
Sbjct: 920  LMS-EVHAYNRELQLSGRKSDAVQMNVLVSFGTGQIPSTVIETLSIDSNSPLQSIKTIKN 978

Query: 589  LSIYYI 606
            L+  +I
Sbjct: 979  LAAMFI 984


>U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical
           protein F59A6.3 protein.
          Length = 786

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +3

Query: 63  FRTQSDNSSGGTTASGRLRSQFPSS 137
           F ++  NSSGGTT+SG+  SQ  +S
Sbjct: 637 FTSKPSNSSGGTTSSGKNFSQNTTS 661


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,550,402
Number of Sequences: 27780
Number of extensions: 306999
Number of successful extensions: 715
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)