Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_M09
(640 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g03890.1 68418.m00365 hypothetical protein 31 0.65
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 29 2.0
At1g33390.1 68414.m04133 helicase domain-containing protein simi... 29 2.0
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 29 3.4
At1g21170.1 68414.m02647 expressed protein 29 3.4
At3g58810.2 68416.m06555 zinc transporter, putative similar to z... 28 4.5
At3g58810.1 68416.m06554 zinc transporter, putative similar to z... 28 4.5
At3g16460.2 68416.m02097 jacalin lectin family protein contains ... 28 4.5
At3g16460.1 68416.m02098 jacalin lectin family protein contains ... 28 4.5
At2g30290.1 68415.m03687 vacuolar sorting receptor, putative sim... 27 7.9
>At5g03890.1 68418.m00365 hypothetical protein
Length = 179
Score = 31.1 bits (67), Expect = 0.65
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 370 VKLLVDEGKADKILMSHDIHTKHRLTHFGGHGYSHIINNVLPRMK 504
+K++ D+GK + +H H LT F GH SH ++LP K
Sbjct: 12 IKIVRDDGKVLEYREPISVH--HILTQFSGHSISHNNTHLLPDAK 54
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 139 RDIEAPFEIIRLYLEAGGSADKVVMSHLDRTLLKDEDLLEFSKL 270
R +E P+ I++ G + S L T +K+ED LEFSK+
Sbjct: 166 RKMEVPYCIVKGKSRLGAVVHQKTASCLCLTTVKNEDKLEFSKI 209
>At1g33390.1 68414.m04133 helicase domain-containing protein similar
to kurz protein [Drosophila melanogaster] GI:5869803;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1237
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 81 NSSGGTTASGRLRSQFPSSPRHRSAL 158
+S+GG T G+ S +P SPRH L
Sbjct: 808 DSNGGLTPLGKAMSHYPMSPRHSRML 833
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 139 RDIEAPFEIIRLYLEAGGSADKVVMSHLDRTLLKDEDLLEFSKL 270
R +E P+ I++ G + + L T +K+ED LEFSK+
Sbjct: 165 RKMEVPYCIVKGKSRLGAVVHQKTAAALCLTTVKNEDKLEFSKI 208
>At1g21170.1 68414.m02647 expressed protein
Length = 1090
Score = 28.7 bits (61), Expect = 3.4
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = -1
Query: 364 PDAVRPRACRCPVSSGSKTLQRQINRTGSMCLVWKIPTDPRPLI---VYGRDVTLRPYQH 194
PD + A +C +SG L+ + R S C + IP DP P + Y R T P ++
Sbjct: 1015 PDDLLALAQQC--TSGMLQLELEKTRLNSACFIETIPLDPVPPVAKAAYSRTSTDSPSRN 1072
Query: 193 F 191
+
Sbjct: 1073 Y 1073
>At3g58810.2 68416.m06555 zinc transporter, putative similar to zinc
transporter 4; ZnT4 [Mus musculus]
gi|2582990|gb|AAB82593; similar to zinc transporter ZAT
[Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of
the cation diffusion facilitator (CDF) family, or cation
efflux (CE) family, PMID:11500563
Length = 393
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +1
Query: 370 VKLLVDEGKADKILMSHDIHTKHRLTHFGGHGYSH 474
V LLV+ A IL+ HD H +H GHG+SH
Sbjct: 184 VGLLVNIAMA--ILLGHDHGHGHGHSHDNGHGHSH 216
>At3g58810.1 68416.m06554 zinc transporter, putative similar to zinc
transporter 4; ZnT4 [Mus musculus]
gi|2582990|gb|AAB82593; similar to zinc transporter ZAT
[Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of
the cation diffusion facilitator (CDF) family, or cation
efflux (CE) family, PMID:11500563
Length = 432
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +1
Query: 370 VKLLVDEGKADKILMSHDIHTKHRLTHFGGHGYSH 474
V LLV+ A IL+ HD H +H GHG+SH
Sbjct: 223 VGLLVNIAMA--ILLGHDHGHGHGHSHDNGHGHSH 255
>At3g16460.2 68416.m02097 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 647
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +1
Query: 208 VMSHLDRTLLKDEDLLEFSKLGTYCQFDLFGVEVSYYQMRPDTDMPSDGQRLDK 369
V++H D L+ E E LG + +L EVS Y P TD Q DK
Sbjct: 320 VINHPDEYLVSVEGWYETVMLGIQFKTNLNTYEVSIYPFEPSTDTKFTLQVQDK 373
>At3g16460.1 68416.m02098 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 705
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +1
Query: 208 VMSHLDRTLLKDEDLLEFSKLGTYCQFDLFGVEVSYYQMRPDTDMPSDGQRLDK 369
V++H D L+ E E LG + +L EVS Y P TD Q DK
Sbjct: 320 VINHPDEYLVSVEGWYETVMLGIQFKTNLNTYEVSIYPFEPSTDTKFTLQVQDK 373
>At2g30290.1 68415.m03687 vacuolar sorting receptor, putative
similar to vacuolar sorting receptor homolog
[Arabidopsis thaliana] GI:1737218
Length = 625
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 367 CPDAVRPRACRCPVSSGSKTL 305
C D R R C+CP+ G K L
Sbjct: 437 CRDTFRGRVCQCPIVQGVKFL 457
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,947,522
Number of Sequences: 28952
Number of extensions: 297129
Number of successful extensions: 742
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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