Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M06
         (502 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1655 + 38940790-38940864,38941245-38942057,38942149-389422...    30   0.91 
04_04_0962 + 29728983-29729034,29729622-29731369,29731656-297317...    29   2.1  
04_01_0121 + 1253201-1253584                                           28   3.7  
11_03_0212 - 11761856-11762037,11762302-11762398,11763571-117645...    27   8.5  
09_06_0059 - 20584196-20584288,20584389-20585055,20585411-205857...    27   8.5  
08_02_1508 + 27602104-27602265,27602398-27602449,27603357-276047...    27   8.5  
07_03_1115 - 24076506-24076677,24077169-24077266,24077622-240777...    27   8.5  
02_05_0044 - 25375239-25376233,25377233-25377364,25377586-25378504     27   8.5  

>01_06_1655 +
           38940790-38940864,38941245-38942057,38942149-38942268,
           38942883-38943566
          Length = 563

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +3

Query: 246 FKIPNQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQAP 407
           ++I    P T   P    S P+  P V+    + R D D D    V  +P  +P
Sbjct: 101 YQITPAKPATVTAPAAAASLPAPPPPVSARERQRRRDVDDDKPAIVLPLPPPSP 154


>04_04_0962 +
           29728983-29729034,29729622-29731369,29731656-29731742,
           29732035-29732199,29732437-29732526,29732863-29733027,
           29733124-29733418,29733550-29733764,29733879-29733947,
           29734107-29734184,29734466-29734529,29734658-29734897,
           29734985-29735124
          Length = 1135

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +3

Query: 198 AQANANDIDLEEINSIFKIPNQAPTTTK--KPTM 293
           ++A AN I +E I    K+P++APT T+  KP M
Sbjct: 892 SRAEANMISVERILQYTKLPSEAPTITEGSKPPM 925


>04_01_0121 + 1253201-1253584
          Length = 127

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 270 TTTKKPTMTVSAPS-AVPTVNTNGNRGRYDTDPDDINSVFKIPTQAP 407
           TT K+    ++ PS A+P + T     R  T+ D +N+V+K   Q P
Sbjct: 33  TTVKESIADLNLPSIAIPNLRTFQAMTRSVTNVDQVNAVYKAFLQPP 79


>11_03_0212 -
           11761856-11762037,11762302-11762398,11763571-11764545,
           11766172-11766263,11766450-11766510
          Length = 468

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = +3

Query: 315 VPTVNTNGNRGRYDTDP-DDINSVFKIPTQAPGT 413
           +PT N    +G + T P D +   F IP   P T
Sbjct: 137 IPTANNEQQKGNFITTPKDKVAKSFDIPNNFPNT 170


>09_06_0059 -
           20584196-20584288,20584389-20585055,20585411-20585732,
           20585862-20586000,20586261-20586322,20586371-20586434,
           20586674-20586826,20586952-20587082,20587175-20587336,
           20588060-20588264
          Length = 665

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +3

Query: 159 RILAILVLVGSAHA-QANANDIDLEEINSIFKIPNQAPTTTKKPTMTVSAPSAVP 320
           R  +  +  G A A   +A  IDLE  N   K P+Q    T +P + V  P  VP
Sbjct: 417 RTASSTINAGDAQACSTSATHIDLENKNGDSKTPSQDKRETNQPPIRV-VPFPVP 470


>08_02_1508 +
           27602104-27602265,27602398-27602449,27603357-27604757,
           27604833-27606140,27606594-27607435
          Length = 1254

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 258 NQAPTTTKKPTMTVSAPSAVPTV 326
           ++APTT K+P+ T   PS  P +
Sbjct: 314 SRAPTTQKQPSSTFFTPSTTPKI 336


>07_03_1115 -
           24076506-24076677,24077169-24077266,24077622-24077743,
           24079059-24079235,24079809-24079897,24079919-24079965,
           24080423-24080519,24080600-24080682,24080716-24080796,
           24081043-24081199,24081323-24081750,24081985-24082014,
           24083180-24083300,24083432-24083697
          Length = 655

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +2

Query: 191 CSRPGKRQ*YRPRRNKQH---FQNTESSTNNY*ETNHDC*CPISCSDCKYQR 337
           C + G  Q   P   + H   FQ   SST +  + N DC C    S C Y+R
Sbjct: 122 CEQCGNHQSESPNIIEAHDPRFQPDLSSTYSPVKCNVDCTCDNERSQCTYER 173


>02_05_0044 - 25375239-25376233,25377233-25377364,25377586-25378504
          Length = 681

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 437 SGDGYRIDCSRSLRRYFENTVYIIGVCIIASSITV 333
           S  GY  +C+    RY +   YI+G C +   ITV
Sbjct: 280 SSGGYTCECTN---RYLQGNPYILGGCNMQDHITV 311


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,860,165
Number of Sequences: 37544
Number of extensions: 225050
Number of successful extensions: 653
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)