Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M06
         (502 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14380.1 68418.m01680 hydroxyproline-rich glycoprotein family...    30   0.76 
At5g15060.1 68418.m01765 hypothetical protein                          28   3.1  
At5g55310.1 68418.m06893 DNA topoisomerase I, putative similar t...    28   4.1  
At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protei...    27   5.4  
At1g74520.1 68414.m08633 ABA-responsive protein (HVA22a) identic...    27   7.1  
At2g21110.1 68415.m02505 disease resistance-responsive family pr...    27   9.4  

>At5g14380.1 68418.m01680 hydroxyproline-rich glycoprotein family
           protein identical to gi|4775268|emb|CAB42531
          Length = 150

 Score = 30.3 bits (65), Expect = 0.76
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +3

Query: 150 KMYRILAILVLVGSAHAQANANDIDLEEINSIFKIPNQAPT-TTKKPTMTVSAPSAVP 320
           + + +L +L L  +    A+A     ++  S    P +APT TTK P+    AP+A P
Sbjct: 3   RQFVVLVLLTLTIATAFAADAPSASPKKSPSPTAAPTKAPTATTKAPSAPTKAPAAAP 60


>At5g15060.1 68418.m01765 hypothetical protein 
          Length = 245

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = +3

Query: 174 LVLVGS--AHAQANANDIDLEEI 236
           L+LVGS  +HA AN ND++LE +
Sbjct: 170 LILVGSNLSHANANENDVNLEAL 192


>At5g55310.1 68418.m06893 DNA topoisomerase I, putative similar to
           Swiss-Prot:P30181 DNA topoisomerase I [Arabidopsis
           thaliana]
          Length = 917

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
 Frame = +3

Query: 315 VPTVNTNGNRGRYDTDPDDINSVFKIPTQAPGTVN---PVXXXXXXXXXXXXESAP 473
           V  V  NG+ G  D D DDI  VFK  +    T N   P+            +S+P
Sbjct: 7   VKPVVPNGHDGYEDEDEDDIPLVFKRNSNTAATTNRPSPINNAMRNSAIGSTKSSP 62


>At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protein
           contains Pfam domain, PF00641: Zn-finger in Ran binding
           protein and others
          Length = 758

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +3

Query: 177 VLVGSAHAQANANDIDLEEINSIFKIPNQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYD 356
           V  G + A +   D D  EI  + K  N+   +T+KP +     +    V T+GN  R D
Sbjct: 373 VAQGGSDANSVDTDEDFPEIMPLRKGVNRYVVSTRKPPLERRLANTENRVATDGNSKRSD 432


>At1g74520.1 68414.m08633 ABA-responsive protein (HVA22a) identical
           to AtHVA22a [Arabidopsis thaliana] GI:4884932
          Length = 177

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 275 SCWCLIRYFENAVYFFEVYI 216
           +CW +I YF  A Y +E ++
Sbjct: 83  TCWLVIPYFSGAAYVYEHFV 102


>At2g21110.1 68415.m02505 disease resistance-responsive family
           protein similar to disease resistance response protein
           206-d [Pisum sativum] gi|508844|gb|AAB18669
          Length = 186

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +3

Query: 288 TMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQAPGTVNP 422
           T+T   PSA+        RG  D+ P    S+F +    P TV P
Sbjct: 46  TLTAPNPSAILIAKPTHTRGDNDSSPSPFGSLFAL--DDPLTVGP 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,722,379
Number of Sequences: 28952
Number of extensions: 190059
Number of successful extensions: 520
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)