Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_M05
(524 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 31 0.11
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|... 29 0.56
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc... 27 1.7
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 27 2.3
SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce... 27 2.3
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 27 2.3
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 3.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 3.0
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 4.0
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 26 4.0
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 4.0
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch... 25 5.2
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.9
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 25 9.1
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po... 25 9.1
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 25 9.1
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 25 9.1
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 25 9.1
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 31.1 bits (67), Expect = 0.11
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 329 QRSGSVRTILTMIGSTSLDSFTISERLWPSTRSRNGAWSVTH 454
Q S T + S + S T+S WP+T +GAWS T+
Sbjct: 40 QNSERFSTASRSVKSGLISSSTVSAWTWPATLLSSGAWSYTY 81
>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 28.7 bits (61), Expect = 0.56
Identities = 29/120 (24%), Positives = 52/120 (43%)
Frame = +1
Query: 16 PESPVSVMDPSLLLRPEEKYEDKPLEAFRDYTVDENDPIKMRVRKTYYDMHTNMTVDFVK 195
P SP + +P + E + K + F +Y+V++ D + R RK + + V+
Sbjct: 197 PISPNNAQEPKFSVLDE--WTKKMVANFEEYSVEDVDKRRERNRK----LSEPLLVNGRY 250
Query: 196 GKMDNWLKFNHFKSTIKDALIKLNDLVDESDPDTNLPNIVHAFQTAERIREDHPDDDWFH 375
D W +F KS I+ + DE LP+ +H+ + E + + +D FH
Sbjct: 251 RVRDRWAQFR--KSEIEKPY-RFTFFTDE------LPSTIHSHEMWELVHDGQSFEDLFH 301
>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -3
Query: 117 IHRVITERFQRFVLVFLLWSE*KRRVHNGHRGFWF 13
IH++I++R Q+F FL W E + V+ + G +F
Sbjct: 35 IHQLISQRNQKFQANFLEW-ENSKLVYRRYAGLYF 68
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/46 (23%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +1
Query: 52 LLRPE-EKYEDKPLEAFRDYTVDENDPIKMRVRKTYYDMHTNMTVD 186
+++P+ +K++ + LEA ++ ++++ M + ++ +M TNM +D
Sbjct: 674 VVKPKRKKHKKQRLEAGEEFDSEDDNSDDMDIEESEEEMDTNMVID 719
>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 26.6 bits (56), Expect = 2.3
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +1
Query: 1 NMKIKPESPVSVMDPSLLLRPEEKYEDKPLEAFRDYTVDENDPIKMRVR 147
N KI P SV+DP+ + E+ + R VD+N P+ R R
Sbjct: 149 NEKITPSMYDSVVDPAPPMPDHEQDVKSEVAKLRSEIVDQNLPLFYRYR 197
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 26.6 bits (56), Expect = 2.3
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +2
Query: 98 SVITRWMKTIRSRCESVKPIMICTR 172
+VIT+W+ + S C VK +++ +
Sbjct: 102 NVITKWLPEVSSNCPGVKLVLVALK 126
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 208 NWLKFNHFKSTIKDALIKLNDLVDESD 288
N LKF H ST+ D + +D VD D
Sbjct: 609 NLLKFVHLVSTVDDLQVVEDDAVDRHD 635
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 3.0
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +1
Query: 172 NMTVDFVKGKMDNWLKFNHFKSTIKDALIKLNDLVDESDPDTNLPNIVHAFQTAERIRE 348
NM + +VK K D W HF I+ VD++ NL + + AE+ R+
Sbjct: 760 NMILRYVKSKADWWTSVAHFNR----ERIRRGATVDKTVAKKNLGRLTRLWLKAEQERQ 814
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.8 bits (54), Expect = 4.0
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -3
Query: 414 GHNLSEIVNESNEVEPIIVRMVLTDPLRCLESVHNVRQVS 295
G++LSE +N N + + ++ DP+R +H + S
Sbjct: 936 GNHLSEKLNSDNHIPKALQKLDSADPIRKPSLLHTSKSYS 975
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 25.8 bits (54), Expect = 4.0
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -3
Query: 438 APLRLLVEGHNLSEIVNESNEVEPIIVRMVLTDPLRCL--ESVHNV 307
A LR V S ++NE+NE + I+ ++L+ LR L E+ N+
Sbjct: 666 ARLRRSVSNKEDSSLINEANEEKEIVTNLLLS-ALRALISENAENI 710
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 25.8 bits (54), Expect = 4.0
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 368 GSTSLDSFTISERLWPSTRSRNGAWSVTHSPSDVNGVTSIVYGD 499
G SF+ S++L+ R + S+THSP+ ++ TS+ D
Sbjct: 25 GFRIFSSFSSSQKLF----QRRSSGSITHSPTALSSTTSLNEND 64
>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 287
Score = 25.4 bits (53), Expect = 5.2
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Frame = +1
Query: 43 PSLLLRPEEKYEDKPLEAFRDYTVDENDPIKMR---VRKTYYDMHTNMTVDFVKGKMDNW 213
P L +E+YE F D EN IK R + + +Y++H +DFV + ++
Sbjct: 70 PQKLDGKQEEYEIIVKLFFLD---GENIDIKKREETLSQVFYNLHMLFGIDFVSTLVVSF 126
Query: 214 LKFNHFKSTIKDALIKLNDLVDESDP 291
K + + ++ D +DE P
Sbjct: 127 PHITFLKESGNSSSNEIYDSIDEIPP 152
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/45 (22%), Positives = 20/45 (44%)
Frame = +1
Query: 1 NMKIKPESPVSVMDPSLLLRPEEKYEDKPLEAFRDYTVDENDPIK 135
+ K+ P + +D L P +Y+ P + DY +P++
Sbjct: 149 SQKLSPGKEKNTLDLKHCLLPSPEYKAPPAKKPEDYEASPGEPVE 193
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 24.6 bits (51), Expect = 9.1
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 16 PESPVSVMDPSLLLRPEEKYEDKPLEAFRDYT 111
PE P+S+ + +L + YE +E + YT
Sbjct: 612 PEKPMSIKERMNMLMTKTDYEKPKVEGYGRYT 643
>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 434
Score = 24.6 bits (51), Expect = 9.1
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -3
Query: 228 VVEFQPIIHFTLDEINCHVRVHIIIGFTDSHLDRIVF 118
V EF+ +DEI+ ++ I++G T +L ++F
Sbjct: 74 VPEFERDASRVIDEIHSQGKIPIVVGGTHYYLQSLLF 110
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 24.6 bits (51), Expect = 9.1
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +1
Query: 298 NLPNIVHAFQTAERIR-EDHPDDDW 369
N N HAFQTAE + D D DW
Sbjct: 262 NSHNHDHAFQTAEAVGVADSIDPDW 286
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 24.6 bits (51), Expect = 9.1
Identities = 19/82 (23%), Positives = 33/82 (40%)
Frame = +1
Query: 1 NMKIKPESPVSVMDPSLLLRPEEKYEDKPLEAFRDYTVDENDPIKMRVRKTYYDMHTNMT 180
N+ P P + PS +RP D P + D ++ T + ++ T
Sbjct: 395 NINFTPLPPSTPSKPSTFVRPHSSSTDSPPSPSTPSNT-QTDSYFIQRENTPTNHNSIPT 453
Query: 181 VDFVKGKMDNWLKFNHFKSTIK 246
+ K MD +L+F+ S +K
Sbjct: 454 IQLEKSSMD-FLRFDPPPSAVK 474
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 24.6 bits (51), Expect = 9.1
Identities = 14/57 (24%), Positives = 24/57 (42%)
Frame = +1
Query: 7 KIKPESPVSVMDPSLLLRPEEKYEDKPLEAFRDYTVDENDPIKMRVRKTYYDMHTNM 177
KI S + + + E D E +D V E+D I ++ R ++TN+
Sbjct: 317 KIASASDIGASEDEEDVDMHESISDNENEGIKDIPVAEDDDITLKFRAAKSKINTNI 373
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,932
Number of Sequences: 5004
Number of extensions: 48804
Number of successful extensions: 144
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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