Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M03
         (615 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      55   5e-08
SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      47   1e-05
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      46   3e-05
SB_2329| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.32 
SB_18241| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.42 
SB_42208| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.98 
SB_19363| Best HMM Match : Neuromodulin (HMM E-Value=1.4)              29   2.3  
SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)                      29   3.0  
SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)                       29   3.0  
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)                   27   9.1  
SB_12515| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 33/146 (22%), Positives = 76/146 (52%), Gaps = 4/146 (2%)
 Frame = +3

Query: 180 NVVSSPLGVMMLMLLYKSGAGEGSRVEIDK-FLGDVDYSEATNPYI-SLSKTFSEMNPDF 353
           N+  SP  +++ + +   GA   +  ++ K F    D  E  + ++ +L+ + S+ N   
Sbjct: 29  NLFYSPASIVVALAMTYLGARGNTATQMTKTFHFPTDVPEKFHDFLQALNASNSDGNQ-- 86

Query: 354 FTMANKIYVGNKYTLDEKFTSSSRQ-YQSEVETIDF-SDTKKAADIINQWANEKTRGPIX 527
             MAN+++    + + E+F  +S++ + +E+  +D+  ++  A D +N+W  +KT+  I 
Sbjct: 87  ILMANRLFAQMGFEILEEFKKASKESFSAEMALVDYVKNSNGARDTVNRWVEQKTKDKIK 146

Query: 528 SPISDDTIDPNAAAGLFNVIFFQGHW 605
           + I +   + +    L N ++F+G W
Sbjct: 147 NLIPEGMFNKDTILCLVNAVYFKGSW 172


>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 22/88 (25%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
 Frame = +3

Query: 357 TMANKIYVGNKYTLDEKFTS-SSRQYQSEVETIDF-SDTKKAADIINQWANEKTRGPIXS 530
           ++AN +++   +++ ++FT    + Y +++  +D+ +D + A   +NQW  E+T+  I  
Sbjct: 51  SIANNLFLQKDFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKICD 110

Query: 531 PISDDTIDPNAAAGLFNVIFFQGHWHVP 614
            I+    +      L N I+F+G W  P
Sbjct: 111 LIAPGVFNMLTRLTLVNAIYFKGMWDKP 138


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 32/139 (23%), Positives = 65/139 (46%), Gaps = 6/139 (4%)
 Frame = +3

Query: 207 MMLMLLYKSGAGEGSRVEIDKFLG--DVDYSEATNPYISLSKTF--SEMNPDFFTMANKI 374
           M L L+Y    G  + ++I    G  + ++ E    +    +    S++      + NKI
Sbjct: 3   MALGLVYLGSRGT-TAIQIANIFGWKESEFEETHRTFKQFHEALLTSDLGYGEIQLVNKI 61

Query: 375 YVGNKYTLDEKFTSSSRQ-YQSEVETIDFSDTK-KAADIINQWANEKTRGPIXSPISDDT 548
           +  +++ + E+F   +R+ Y SE+  +DF +    A   +N W +++T+G I   I    
Sbjct: 62  WGHDEFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQQTKGNIKELIPHGV 121

Query: 549 IDPNAAAGLFNVIFFQGHW 605
           I+      + N ++F+G W
Sbjct: 122 INSLTRLIIVNAVYFKGVW 140


>SB_2329| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1181

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +3

Query: 282 VDYSEATNPYISLSKTFSEMNPDFFTMANKIYVGNKYTLDEKFTSSSRQYQSEVETIDFS 461
           +  S AT P+I +  T    NP+FF ++    +  + T DE +  +   + ++   I   
Sbjct: 276 IKQSNATTPFIVIQNTLEVKNPNFFEVSLSA-LNQQVTWDEHYVVADVSFGNQSVVIPRR 334

Query: 462 DTKKAADI--INQWAN 503
            +KK   +  +NQ+ N
Sbjct: 335 SSKKMEGLHDMNQYLN 350


>SB_18241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 569 GSCIWIYGVIRDWRXNR-SSGLLISPLINDVS 477
           GSC+W  GV R W+    + G L+S L N V+
Sbjct: 3   GSCLWKLGVFRAWKFGSVNDGFLLSGLSNQVA 34


>SB_42208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 358 LWP-IKSTSEINILWMRNSRALPVSTKARLKLLTSAIPKKQLTSLISGLM 504
           LWP IK  +   + W  N  +LP+       +L S   K  L  L+S +M
Sbjct: 17  LWPAIKDVTHAMVTWTTNGTSLPLRMTNTYDILLSLCQKVGLVRLVSAVM 66


>SB_19363| Best HMM Match : Neuromodulin (HMM E-Value=1.4)
          Length = 361

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 258 EIDKFLGDVDYSEATNPYISLSKTFS 335
           ++D F GD+  +EA+NP+I+  K  S
Sbjct: 216 DMDSFTGDIPETEASNPFIAPQKVVS 241


>SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)
          Length = 468

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +3

Query: 285 DYSEATNPYISLSKTFSEMNPDFFTMA-NKIYVGNKY-TLDEKFTSSSRQY 431
           +YS  +  Y++LSK +S ++ ++ T++ N   +   Y TL + + + S+ Y
Sbjct: 19  NYSTLSRNYLTLSKNYSTLSKNYLTLSKNYSTLSKNYLTLSKNYLTLSKNY 69


>SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)
          Length = 644

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +3

Query: 285 DYSEATNPYISLSKTFSEMNPDFFTMA-NKIYVGNKY-TLDEKFTSSSRQY 431
           +YS  +  Y++LSK +S ++ ++ T++ N   +   Y TL + + + S+ Y
Sbjct: 19  NYSTLSRNYLTLSKNYSTLSKNYLTLSKNYSTLSKNYLTLSKNYLTLSKNY 69



 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = +3

Query: 285 DYSEATNPYISLSKTFSEMNPDFFTMANKIYVGNKYTLDEKFTSSSRQY 431
           +YS  +  Y++LSK +S ++ ++ T++      N  TL + + + S+ Y
Sbjct: 112 NYSTLSKNYLTLSKNYSTLSKNYLTLSK-----NYSTLSKNYLTLSKNY 155


>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2480

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -2

Query: 512  GLLISPLINDVSCFFGIAEVNSFNLALVL 426
            G++ S LIND  C+F    VN +NLA+++
Sbjct: 1806 GIVESVLINDFGCYF---TVNRYNLAMMV 1831


>SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)
          Length = 3083

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 42   FAVIAVCNVRAFYFFDHEYNRTALGDAIDKTSMKLLKEAYTS 167
            + +  V  ++  + F+H Y+R  +  AI K S  L+KE  TS
Sbjct: 1218 YGISNVLPLKKAFTFNHTYSRHGIFKAILKGSGNLIKEEVTS 1259


>SB_12515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 769

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
 Frame = +3

Query: 102 RTALGDAIDKTSMKLLKEAYTSGKDKNVVSSPLGVMMLMLLYK--SGAGEGSRVEIDKFL 275
           R    D +D   ++  K  +     ++      G++ + +L    S +    R+E+ K L
Sbjct: 529 RMRFSDTVDIVDVEEAKRLHREALKQSATDPKTGLIDISILTTGLSASDRKRRLELAKSL 588

Query: 276 GDVDYSEATNPYISLSKTFSEM 341
             +  S+   P +   KTFSEM
Sbjct: 589 KALLTSKGKVPTVDYQKTFSEM 610


>SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 994

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -3

Query: 331 KVLLRLMY-GLVASL*STSPKNLSISTRLPSPAPDL*RSISIITPNGE 191
           K+  R +Y  +V  L   S ++L+I  R PSP+PD  R  S  +P+ +
Sbjct: 271 KLKTRFLYLKVVIKLEGGSDEDLAILDRSPSPSPDRRRQRSQSSPHSD 318


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,400,578
Number of Sequences: 59808
Number of extensions: 364322
Number of successful extensions: 1002
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)