Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M02
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    27   2.0  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    27   2.7  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    27   2.7  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   3.5  
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ...    26   4.7  
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch...    25   6.2  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    25   6.2  

>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 441 GYAIPPIYEVLPEYFNNGEILHTAQRI 521
           GY +PP+Y++   +  + E+L  +Q I
Sbjct: 666 GYVLPPVYKITQIHSGDTELLQLSQEI 692


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = +3

Query: 42  DPVRTDDSVEFAKKQIDISLLYFHAREPNHVSKSITISASWSIENNINHYKNETAVKI 215
           D +R +D  +      ++ L Y +A+    V   + + A W    NIN   NE  + +
Sbjct: 178 DAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNL 235


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 112 WKYNKEISICFFANST 65
           WKYN ++  C+  NST
Sbjct: 116 WKYNPDLDYCYLDNST 131


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 48  VRTDDSVEFAKKQIDISLLYF 110
           ++ D +V+ +KKQI  SLLYF
Sbjct: 262 IKKDSNVKCSKKQILFSLLYF 282


>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +2

Query: 68  RVREKADRYFLIILPCSRTKSRFEIYNYF 154
           ++R+ A +   II+P S +K++ E+ +YF
Sbjct: 110 KLRDSASQIMDIIIPDSLSKAKVELLDYF 138


>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 445

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 60  DSVEFAKKQIDISLLYFHAREPNHVSKSITISASWSIENNINHYKNETAVK 212
           +S+    K +  S+L + A++ N+    +  S+ WSI  N + Y+N   +K
Sbjct: 98  NSIHNQLKDLSSSILSY-AQDCNYPFSQMPSSSQWSIVRNSSWYENLKLLK 147


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 153 SASWSIENNINHYKNETAVKI 215
           + SWS  ++  HYKNE A  I
Sbjct: 276 NGSWSSTDDTKHYKNEWAESI 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,569,838
Number of Sequences: 5004
Number of extensions: 55505
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)