Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M02
         (586 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.2  
SB_23312| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_56705| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1020

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 492 GEILHTAQRIGVHRITHDRVLSFHFTMG 575
           G +L  A    VHR+ H++VL F+ T+G
Sbjct: 60  GLLLTEAMVYAVHRVNHEKVLPFNMTLG 87


>SB_23312| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 444 YAIPPIYEVLPEYFNNGEILHTAQR 518
           YA+P  Y  LP+Y NN E++   +R
Sbjct: 9   YAVPVFYNALPQYLNN-ELVRIEKR 32


>SB_56705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +3

Query: 285 HQFEAVIMFNVLYSAKDYDTFYKTTVY--MKDRVNQDLYIYVLSTLHIHR 428
           HQF   I+F+ ++    Y TF +        DR+  DL +Y +S   I R
Sbjct: 9   HQFPFNILFHKMFITHFYSTFIELAQLHDQHDRLELDLILYAISDALIIR 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,423,348
Number of Sequences: 59808
Number of extensions: 371574
Number of successful extensions: 827
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)