Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M01
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   9.0  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    25   9.0  

>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 119 LQVDLCVFCIIILCML 72
           L VDLC   II+ CML
Sbjct: 260 LNVDLCKILIILTCML 275


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +3

Query: 228 YEADKSFVNHFFFADNDKV*VQPMKMTDLINRN 326
           Y+A K  VN  F  D D          +L+NRN
Sbjct: 371 YKASKELVNTAFHGDTDFTKSLDTAFRELVNRN 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,097,912
Number of Sequences: 5004
Number of extensions: 42056
Number of successful extensions: 78
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)