Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_M01
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_41838| Best HMM Match : Bromo_TP (HMM E-Value=7.9e-19) 30 1.0
SB_5992| Best HMM Match : 7tm_1 (HMM E-Value=1e-30) 29 3.1
SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_46562| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 30.7 bits (66), Expect = 0.76
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -1
Query: 218 YL*SCNKCLILNKITLLYVFFKLVIVSSVQRKLLQVDLCVFCIIILCMLYIEYCY 54
YL C C+ ++L Y++ + + ++ L + LC FCI L L + + Y
Sbjct: 1847 YLCLCAICIFALSVSLRYLYLCAICIFALSVSLRYLYLCAFCIFAL-YLSLRFLY 1900
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = -1
Query: 218 YL*SCNKCLILNKITLLYVFFKLVIVSSVQRKLLQVDLCVFCIIIL--CMLYIEYCYFNK 45
YL C C+ ++L Y+ + V ++ L + LC CI L + Y+ C F
Sbjct: 1709 YLYFCTICVFALSVSLRYLCLCAICVFALSVSLRYLYLCAICIFALSVSLHYLYLCVFVF 1768
Query: 44 TPLI 33
P +
Sbjct: 1769 LPYL 1772
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -1
Query: 218 YL*SCNKCLILNKITLLYVFFKLVIVSSVQRKLLQVDLCVFCIIIL 81
YL C C+ ++L +++ + V ++ L + LC FCI L
Sbjct: 1881 YLYLCAFCIFALYLSLRFLYLCAIFVFALSVSLRYICLCAFCIFAL 1926
Score = 28.7 bits (61), Expect = 3.1
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Frame = -1
Query: 299 HWLYLHFV-IVSEKKMIHK*FICLVYRF-------YL*SCNKCLILNKITLLYVFFKLVI 144
H+LYL + I + +H + C + F YL C C++ ++L Y+ +
Sbjct: 1795 HYLYLCGIRIFALSVSLHYLYPCTICIFALSVSLHYLSLCAVCILALFVSLSYLCLCAIC 1854
Query: 143 VSSVQRKLLQVDLCVFCIIIL--CMLYIEYCYF 51
+ ++ L + LC CI L + Y+ C F
Sbjct: 1855 IFALSVSLRYLYLCAICIFALSVSLRYLYLCAF 1887
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = -1
Query: 197 CLILNKITLLYVFFKLVIVSSVQRKLLQVDLCVFCIIILCMLYIEYCY 54
C+ ++L Y++F + V ++ L + LC C+ L + + Y Y
Sbjct: 1699 CIFALSVSLRYLYFCTICVFALSVSLRYLCLCAICVFAL-SVSLRYLY 1745
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = -1
Query: 242 FICLVYRFYL*SCNKCLILNKITLLYVFFKLVIVSSVQRKLLQVDLCVFCIIIL 81
++CL YL C + ++L Y++ + + ++ L + LC CI+ L
Sbjct: 1788 YLCLRAMHYLYLCGIRIFALSVSLHYLYPCTICIFALSVSLHYLSLCAVCILAL 1841
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -2
Query: 223 VFIYNLAISVLY*IK*HYCMFFLSWSLFRAYSVNYCKSICVYFALLF-YVCYI 68
+ I+ L++S+ Y C+F LS SL Y +C +Y +L F Y+C I
Sbjct: 1853 ICIFALSVSLRYLYLCAICIFALSVSLRYLYLCAFC-IFALYLSLRFLYLCAI 1904
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -1
Query: 218 YL*SCNKCLILNKITLLYVFFKLVIVSSVQRKLLQVDLCVFCIIILCMLYIEYCY 54
YL C C+ ++L Y++ + + ++ L + LC FCI L + + Y Y
Sbjct: 1932 YLCLCAICIFAVFVSLRYLYLCGIRIFALSVSLRFLYLCAFCIFAL-SVSLRYLY 1985
>SB_41838| Best HMM Match : Bromo_TP (HMM E-Value=7.9e-19)
Length = 363
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 173 LLYVFFKLVIVSSVQRKLLQVDLCVFC 93
LL +F + +SVQRK+LQ+ +C C
Sbjct: 84 LLQLFSNMAADTSVQRKILQIAVCALC 110
>SB_5992| Best HMM Match : 7tm_1 (HMM E-Value=1e-30)
Length = 302
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = -1
Query: 179 ITLLYVFFKLVIVSSVQRKLLQVDLCVFCIIILCMLYI 66
IT L++ ++ I+S + + FC++ +CM Y+
Sbjct: 135 ITTLHILYRYHIISYTHFFYVMMSALSFCLLAMCMAYV 172
>SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 27.5 bits (58), Expect = 7.1
Identities = 23/76 (30%), Positives = 34/76 (44%)
Frame = -2
Query: 286 YTLSLSAKKK*FTNDLSASYIVFIYNLAISVLY*IK*HYCMFFLSWSLFRAYSVNYCKSI 107
Y LS+ N LS ++ + I L+I+V + C LS SV YC S+
Sbjct: 132 YCLSVGIPLLSVLNCLSVTFCLSIVCLSITVCPLLSITVCPL-LSVCYCPLLSVRYCLSV 190
Query: 106 CVYFALLFYVCYI*SI 59
V+ L VC + S+
Sbjct: 191 TVHCCLSVTVCLLLSV 206
>SB_46562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 27.5 bits (58), Expect = 7.1
Identities = 9/35 (25%), Positives = 22/35 (62%)
Frame = +1
Query: 79 HKIIMQNTHKSTCNNLRCTLETMTNLKKTYNSVIL 183
H ++++TH+ C N +CT E + ++ + + ++L
Sbjct: 136 HFYLIRSTHRKHCKNEKCTHEEVASIIMSTSGLLL 170
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,571,148
Number of Sequences: 59808
Number of extensions: 270428
Number of successful extensions: 579
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -