Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M01
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92790-2|CAB07224.2|  377|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z83238-6|CAB05800.1|  943|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z81586-4|CAB04688.2|  366|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z92790-2|CAB07224.2|  377|Caenorhabditis elegans Hypothetical
           protein H03G16.2 protein.
          Length = 377

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 91  MQNTHKSTCNNLRCTLETMTNLKK 162
           +QN  KS CN+++C  ++   LKK
Sbjct: 216 LQNVTKSVCNSIKCDFDSGDCLKK 239


>Z83238-6|CAB05800.1|  943|Caenorhabditis elegans Hypothetical
           protein T08G3.7 protein.
          Length = 943

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 478 ILHGGKINMKVISMSNNLICKLVTNEVFL 392
           ++H G IN+K  +   + +C L T E F+
Sbjct: 891 LIHDGTINLKAYTADPDKMCTLFTEEEFI 919


>Z81586-4|CAB04688.2|  366|Caenorhabditis elegans Hypothetical
           protein T05F1.5 protein.
          Length = 366

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -3

Query: 381 TYIFHNINKKDSV**LMLCFYLLNQSFSLAVPTLCHCQRKKNDSQMI 241
           ++ FHNI++KD +    LC    + +    VP L   Q  +ND  ++
Sbjct: 289 SFFFHNIDQKDVI---ALCALATHYNLHSVVPPLPPMQLLENDQNIL 332


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,417,381
Number of Sequences: 27780
Number of extensions: 233570
Number of successful extensions: 560
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)