Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_M01
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62230.1 68418.m07814 leucine-rich repeat family protein / pr...    28   3.3  
At1g22670.1 68414.m02833 protease-associated zinc finger (C3HC4-...    27   5.8  

>At5g62230.1 68418.m07814 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 966

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 197 CLILNKITLLYVFFKLVIVSSVQRKLLQ 114
           C++L  ITLL + F  V  S  Q+K+LQ
Sbjct: 587 CIVLGVITLLCMIFLAVYKSMQQKKILQ 614


>At1g22670.1 68414.m02833 protease-associated zinc finger
           (C3HC4-type RING finger) family protein contains Pfam
           domain, PF02225: protease-associated (PA) domain and
           Pfam domain, PF00097: Zinc finger, C3HC4 type (RING
           finger); similar to ReMembR-H2 protein JR702
           [Arabidopsis thaliana] gi|6942149|gb|AAF32326
          Length = 422

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 119 LQVDLCVFCIIILCMLYIEYC 57
           L + L +FC+++ C+ +  YC
Sbjct: 173 LILSLAIFCVMVTCVFFYRYC 193


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,119,620
Number of Sequences: 28952
Number of extensions: 187700
Number of successful extensions: 361
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)