Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_L22
         (543 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0791 - 20590744-20591211,20591379-20591439,20591525-205915...    29   1.8  
01_06_1769 - 39774042-39774566,39775448-39775498,39776371-39776604     28   5.5  
01_01_0086 - 644732-645433                                             27   9.7  

>10_08_0791 -
           20590744-20591211,20591379-20591439,20591525-20591592,
           20592015-20592188,20592291-20592331,20592571-20592620,
           20593083-20593171,20593250-20593324,20593631-20593719,
           20593895-20593955,20594111-20594227,20594465-20594667,
           20594785-20594842,20594951-20595103
          Length = 568

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 214 HFPFGRPLAVIELVNTAKYYYVHCSKSCY 128
           HF FG+P  V+ L++ A + Y    +SC+
Sbjct: 351 HFWFGKPRLVLHLIHFASFQYEFGLRSCF 379


>01_06_1769 - 39774042-39774566,39775448-39775498,39776371-39776604
          Length = 269

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 480 YFFISVLSYDMYIYLLYFIV-KNRGTV 403
           +FF S+L YD+Y Y+   I+ K RG V
Sbjct: 74  FFFKSLLKYDLYFYIFVHILNKVRGYV 100


>01_01_0086 - 644732-645433
          Length = 233

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = -2

Query: 236 ILLSKCRTFSVWPSFSCDRISKY-GEVLLCTLFQVVLRNGQNHFY 105
           I  +  R F VWP       ++  G +L C     V+R   +HFY
Sbjct: 64  ITFAAYRRFPVWPKLPLYVAAQLAGSLLACLSVNAVMRPRHDHFY 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,235,902
Number of Sequences: 37544
Number of extensions: 188575
Number of successful extensions: 350
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)