Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_L22
(543 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49722| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.46
SB_30959| Best HMM Match : SRP54 (HMM E-Value=5.2e-25) 29 2.5
SB_9588| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_16115| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_22721| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_45173| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9) 28 4.3
SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24) 27 7.5
SB_56945| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.5
SB_17715| Best HMM Match : BTG (HMM E-Value=3.6e-30) 27 9.9
SB_15725| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_30515| Best HMM Match : Lyase_8 (HMM E-Value=1.2e-05) 27 9.9
>SB_49722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 31.5 bits (68), Expect = 0.46
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +1
Query: 130 STTWNSVHNNTSPYLLILSQLKDGQTENVLHLLNKIHFN 246
ST + N SP LL+L G T+N HLL FN
Sbjct: 118 STDMSKAFENVSPALLLLKLDAYGMTKNSFHLLRSYFFN 156
>SB_30959| Best HMM Match : SRP54 (HMM E-Value=5.2e-25)
Length = 440
Score = 29.1 bits (62), Expect = 2.5
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = -1
Query: 543 YKLADNMYYEIFSICVNNK-FRYFFISVL--SYDMYIYLLYFIVKN 415
YKL DN + +F I N+ ++FF+SVL SY +YI + VK+
Sbjct: 118 YKL-DNEFELVFVIIYNSSGIKFFFLSVLCTSYTVYINCIASTVKS 162
>SB_9588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 281
Score = 29.1 bits (62), Expect = 2.5
Identities = 9/37 (24%), Positives = 24/37 (64%)
Frame = +3
Query: 18 TLVNTISVHSLFDYSFVILYLVTIILCLLVKVILTVT 128
T++NT ++ + +I +T+I+ +++ +I+T+T
Sbjct: 161 TIINTTTITITSTITIIITITITMIITMIITIIITIT 197
Score = 27.5 bits (58), Expect = 7.5
Identities = 9/37 (24%), Positives = 23/37 (62%)
Frame = +3
Query: 18 TLVNTISVHSLFDYSFVILYLVTIILCLLVKVILTVT 128
T+ +TI++ + +I ++TII+ + + + +T+T
Sbjct: 169 TITSTITIIITITITMIITMIITIIITITITITITIT 205
>SB_16115| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 102
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 157 NTSPYLLILSQLKDGQTENVLHLLNKIHFN 246
N SP LL+L G T+N HLL FN
Sbjct: 7 NVSPALLLLKLDAYGMTKNSFHLLRSYFFN 36
>SB_22721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 157 NTSPYLLILSQLKDGQTENVLHLLNKIHFN 246
N SP LL+L G T+N HLL FN
Sbjct: 7 NVSPALLLLKLDAYGMTKNSFHLLRSYFFN 36
>SB_45173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 487
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +3
Query: 18 TLVNTISVHSLFDYSFVILYLVTIILCLLVKVILTVT 128
T++ TI+V + I ++TII+ +L+ +I+T+T
Sbjct: 173 TIIITITVIITITTTTSITIIITIIITILITIIITIT 209
>SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9)
Length = 492
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 525 MYYEIFSICVNNKFRYFFISVLSYDMYIYLLY 430
M+ FS+C+ FRY + V Y ++LL+
Sbjct: 64 MFTRCFSLCLPGVFRYDYTGVFRYVYPVFLLF 95
>SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24)
Length = 373
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -3
Query: 226 VNAGHFPFGRPLAVIELVNTAKYYYVHCSKSCYVTVRITF 107
+N HFPF I + + YY ++C C + + +TF
Sbjct: 141 LNIRHFPFDDQ---INIRRRSLYYVINCFTPCLIMLALTF 177
>SB_56945| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 27.5 bits (58), Expect = 7.5
Identities = 10/35 (28%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +3
Query: 27 NTISVHS-LFDYSFVILYLVTIILCLLVKVILTVT 128
+++ +H ++ + F+I+ +TII+ + + V +TVT
Sbjct: 33 DSLPIHKKVWSFFFIIIIFITIIITITITVTVTVT 67
>SB_17715| Best HMM Match : BTG (HMM E-Value=3.6e-30)
Length = 184
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 121 PLRSTTWNSVHNNTSPYLLILSQLKDGQTENVLHLLNKIHFN 246
P R + ++ NTSPY ++ + +T N + NK +FN
Sbjct: 126 PRRHQPFTPINFNTSPYHCTVTYPANNRTYNPKYFQNKENFN 167
>SB_15725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -3
Query: 202 GRPLAV--IELVNTAKYYYVHCSKSCYVTVR 116
G PL V I+ ++ + YY C+K+ VTVR
Sbjct: 20 GPPLEVDGIDKLDAQRLYYTRCAKALLVTVR 50
>SB_30515| Best HMM Match : Lyase_8 (HMM E-Value=1.2e-05)
Length = 1364
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 518 MRYFLFALIINLGTSLLVYCRTICI 444
+RY+LF N GT LL+ +C+
Sbjct: 28 LRYYLFRKAFNFGTGLLLRRHVLCL 52
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,277,723
Number of Sequences: 59808
Number of extensions: 263167
Number of successful extensions: 701
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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