Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_L22
         (543 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49680.1 68418.m06151 cell expansion protein, putative simila...    28   4.6  
At1g78770.1 68414.m09180 cell division cycle family protein simi...    27   6.1  
At3g20810.2 68416.m02632 transcription factor jumonji (jmjC) dom...    27   8.1  
At3g20810.1 68416.m02631 transcription factor jumonji (jmjC) dom...    27   8.1  

>At5g49680.1 68418.m06151 cell expansion protein, putative similar
           to SABRE [Arabidopsis thaliana] GI:719291
          Length = 1378

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 224 KCRTFSVWPSFSCDRISKYGEVLL 153
           K RTFS WP F   RI + G + L
Sbjct: 257 KLRTFSRWPRFGVPRIPRSGNLSL 280


>At1g78770.1 68414.m09180 cell division cycle family protein similar
           to cell division cycle protein GI:603230 from [Homo
           sapiens]; contains Pfam profile PF00515 TPR Domain
           148977 (apparently not full-length).
          Length = 543

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 543 YKLADNMYYEIFSICVNNKFRYFFISVLSYDMYIY 439
           YKLAD  + +  +IC ++   Y  + V++Y M  Y
Sbjct: 393 YKLADQFFMQAKAICPSDPLVYNELGVVAYHMKEY 427


>At3g20810.2 68416.m02632 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain PF02373:
           jmjC domain
          Length = 429

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 206 VWPSFSCDRISKYGEVLLCTLFQVVLRN 123
           ++PSF  D +  Y E +LC   QV L N
Sbjct: 345 LYPSFLQDELYPYSETMLCNSSQVDLDN 372


>At3g20810.1 68416.m02631 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain PF02373:
           jmjC domain
          Length = 418

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 206 VWPSFSCDRISKYGEVLLCTLFQVVLRN 123
           ++PSF  D +  Y E +LC   QV L N
Sbjct: 334 LYPSFLQDELYPYSETMLCNSSQVDLDN 361


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,765,459
Number of Sequences: 28952
Number of extensions: 172653
Number of successful extensions: 323
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)