Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_L20
(363 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0426 + 3292358-3292780,3292858-3293094,3293166-3293759 31 0.28
02_01_0035 - 220036-221419,222050-222801 30 0.49
09_03_0087 - 12237226-12237346,12237423-12237555,12237641-122377... 29 1.5
02_05_0868 + 32342967-32343915,32344389-32344447 29 1.5
12_01_0592 + 4848467-4849164,4849413-4849491 27 3.4
03_05_0509 - 25032494-25033156 27 3.4
01_06_0388 + 28927211-28928467 27 3.4
04_04_1462 - 33769122-33769151,33769385-33769426,33769571-337701... 27 4.5
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 27 6.0
01_06_1737 - 39559321-39559461,39559761-39559817,39559919-395601... 26 7.9
>03_01_0426 + 3292358-3292780,3292858-3293094,3293166-3293759
Length = 417
Score = 31.1 bits (67), Expect = 0.28
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 128 PPARPRQSPRHNRHHQDYHSEYGCEPECSLREGD 27
P RP P+H RH + Y + CE + E D
Sbjct: 203 PRPRPPSPPQHPRHRRSYEMDRSCEENAKIVEVD 236
>02_01_0035 - 220036-221419,222050-222801
Length = 711
Score = 30.3 bits (65), Expect = 0.49
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 128 PPARPRQSPRHNRHHQDYHSEYGCEPECSLREGDG 24
PP R +P+H+ HH +H G + E ++ E G
Sbjct: 124 PPPPARWAPQHHHHHHPHH-HLGLDVEAAVPESSG 157
>09_03_0087 -
12237226-12237346,12237423-12237555,12237641-12237730,
12238992-12239198,12239738-12239813,12240019-12240148,
12241024-12241121
Length = 284
Score = 28.7 bits (61), Expect = 1.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 128 PPARPRQSPRHNRHHQDYHSEYGCEPECSLRE 33
PP RPR P + H + Y SE G + +R+
Sbjct: 28 PPCRPRVFPARSNHSRGYSSEGGSKYNRPMRQ 59
>02_05_0868 + 32342967-32343915,32344389-32344447
Length = 335
Score = 28.7 bits (61), Expect = 1.5
Identities = 19/45 (42%), Positives = 19/45 (42%)
Frame = -2
Query: 143 LRECGPPARPRQSPRHNRHHQDYHSEYGCEPECSLREGDGERPDV 9
L E PP RP P H Q YH Y P L G GE P V
Sbjct: 49 LHEIDPPPRPAPPPPH-FFPQPYHPHYDGHPRRWLIYG-GEAPPV 91
>12_01_0592 + 4848467-4849164,4849413-4849491
Length = 258
Score = 27.5 bits (58), Expect = 3.4
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = -2
Query: 146 PLRECGPPARPRQSPRHNRHHQDYHSE 66
P E GP ARPR +P H HQ SE
Sbjct: 30 PHAELGPIARPRDAP-HRHGHQRTSSE 55
>03_05_0509 - 25032494-25033156
Length = 220
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Frame = -2
Query: 98 HNRHHQDYHSEYGCEPE----CSLREGDGERPD 12
H+ HH+ + SE C P + R GD PD
Sbjct: 19 HHHHHRRHRSETSCPPTSVAVAAARAGDAHAPD 51
>01_06_0388 + 28927211-28928467
Length = 418
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 100 DTTGTIRIITVSTAVNQNVACVRATVSDP 14
D GT+R+ITV++ Q V C+ ++DP
Sbjct: 370 DPEGTVRLITVASIGQQEVFCL-GLINDP 397
>04_04_1462 -
33769122-33769151,33769385-33769426,33769571-33770158,
33770398-33770508,33770585-33770625,33771238-33771382,
33771578-33771781,33772626-33772769,33772991-33773183,
33774559-33774602,33774694-33774822,33774907-33774954,
33775058-33775120,33775198-33775236,33776694-33776767,
33777460-33777518,33777709-33777768,33777920-33778044,
33778693-33778751,33779418-33779511,33779572-33779625,
33779775-33779813,33780423-33780602
Length = 854
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Frame = +1
Query: 97 CRGDWRGRAGG-PHSRSGC 150
C GD R RA G PH RS C
Sbjct: 399 CCGDRRSRAAGDPHGRSSC 417
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 26.6 bits (56), Expect = 6.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 119 RPRQSPRHNRHHQDYHSEYG 60
R Q RH+RHH D+ +G
Sbjct: 528 RRHQKGRHHRHHHDHRHRHG 547
>01_06_1737 -
39559321-39559461,39559761-39559817,39559919-39560117,
39560217-39560344,39560443-39560548,39560721-39560800,
39561189-39561286,39561368-39561481,39561567-39561707,
39561801-39561885,39562761-39563099
Length = 495
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 149 QPLRECGPPARPRQSPRHNRHHQDYHS 69
QP G ++PR R++R DYHS
Sbjct: 84 QPPARAGGASKPRLDRRYSRIADDYHS 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,323,823
Number of Sequences: 37544
Number of extensions: 80885
Number of successful extensions: 358
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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