Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_L20
         (363 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.85 
SB_31789| Best HMM Match : Ion_trans (HMM E-Value=6.3e-37)             27   4.6  
SB_44681| Best HMM Match : DUF1109 (HMM E-Value=0.85)                  27   4.6  
SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)               27   6.0  
SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.0  
SB_34601| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  
SB_22366| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  

>SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +3

Query: 228  SGYAFAHQEGFGRLITS-GKIMRR 296
            + YAF+HQEGFG ++ S    +RR
Sbjct: 1046 TSYAFSHQEGFGSIVMSPASFLRR 1069


>SB_31789| Best HMM Match : Ion_trans (HMM E-Value=6.3e-37)
          Length = 583

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 128 PPARPRQSPRHNRHHQDYHSEYGCEPECSLREGDG 24
           P  RPRQSP+H  +    ++   C+P   L   +G
Sbjct: 504 PVHRPRQSPKHAPNRATINANNICDPPRCLGTSNG 538


>SB_44681| Best HMM Match : DUF1109 (HMM E-Value=0.85)
          Length = 377

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 98  HNRHHQDYHSEYGCEPE 48
           H+ HH DYH ++  EPE
Sbjct: 107 HDYHHHDYHHDHYEEPE 123


>SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1318

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -2

Query: 146 PLRECGPPARPRQSPRHNR---HHQDYHSEYGCEPECSLREGDGERPD 12
           P ++ G PA+ R+ P H+R   + +    +YG   E     G  ER D
Sbjct: 687 PAQDRGEPAQDRRQPAHDRREAYGRSRTEDYGASREKRESYGTRERKD 734


>SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)
          Length = 358

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 128 PPARPRQSPRHNRHHQDYHSEYGCEPE 48
           P   P   P H+RH++ +H+  G   E
Sbjct: 167 PHPYPSSGPMHHRHYRRWHNSNGAHQE 193


>SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 137 ECGPPARPRQSPRHNRHHQDYHSEYGCEPECSLRE 33
           EC P    RQ  R   H+ ++ S  GC+P C   E
Sbjct: 766 ECHPSITERQCSRCLDHYFNFTSGVGCQP-CGCNE 799


>SB_34601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1391

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -2

Query: 113 RQSPRHNRHHQDYHSEYGCEPECSLREGDGERPDVG 6
           ++    N +  +    +GC  +CS RE D ++ D G
Sbjct: 448 KRKREENENPAEVKLSFGCSRDCSSRETDDQQLDSG 483


>SB_22366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 128 PPARPRQSPRHNRHHQDYHSEYGCEPECSLREGDG-ERPDVGP 3
           PPA  ++S   +R     H+ YG  P   +RE D  ERP V P
Sbjct: 175 PPASRKRSS--SRPSLSRHASYG-SPPARIREEDALERPPVSP 214


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,176,311
Number of Sequences: 59808
Number of extensions: 95310
Number of successful extensions: 1876
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1874
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)