Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_L20
         (363 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer...    37   0.005
AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer ...    37   0.005
CU457741-7|CAM36348.1|  710|Caenorhabditis elegans Hypothetical ...    28   1.7  
U00047-2|AAA50688.2|  275|Caenorhabditis elegans Abnormal cell l...    27   3.0  
Z81131-1|CAB03423.4|  464|Caenorhabditis elegans Hypothetical pr...    26   7.0  

>AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 2, isoform b protein.
          Length = 1051

 Score = 36.7 bits (81), Expect = 0.005
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +3

Query: 228 SGYAFAHQEGFGRLITSGKIMRRI 299
           SGYAF+H +GFG LI  GK+ + +
Sbjct: 915 SGYAFSHSQGFGELILKGKLFKNV 938


>AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer
            amphipath transporters(subfamily iv p-type atpase)
            protein 2, isoform a protein.
          Length = 1222

 Score = 36.7 bits (81), Expect = 0.005
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +3

Query: 228  SGYAFAHQEGFGRLITSGKIMRRI 299
            SGYAF+H +GFG LI  GK+ + +
Sbjct: 1086 SGYAFSHSQGFGELILKGKLFKNV 1109


>CU457741-7|CAM36348.1|  710|Caenorhabditis elegans Hypothetical
           protein C42C1.7 protein.
          Length = 710

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 110 QSPRHNRHHQDYHSEYGCEPECSL 39
           Q  RH  ++   +SEYGCEP  +L
Sbjct: 506 QECRHRAYNVTMYSEYGCEPLAAL 529


>U00047-2|AAA50688.2|  275|Caenorhabditis elegans Abnormal cell
           lineage protein 37 protein.
          Length = 275

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 149 QPLRECGPPARPRQSPRH 96
           +P R+  PP RPR+ PRH
Sbjct: 92  EPGRQGRPPGRPRKMPRH 109


>Z81131-1|CAB03423.4|  464|Caenorhabditis elegans Hypothetical
           protein T24D1.2 protein.
          Length = 464

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 88  CRLCRGDWRGRAG 126
           C LCR  W GRAG
Sbjct: 416 CPLCRAPWTGRAG 428


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,876,645
Number of Sequences: 27780
Number of extensions: 58491
Number of successful extensions: 262
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)