Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_L20
         (363 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family...    29   1.2  
At3g22440.1 68416.m02836 hydroxyproline-rich glycoprotein family...    28   1.6  
At4g38550.1 68417.m05458 expressed protein                             27   3.7  
At2g44190.1 68415.m05497 expressed protein  contains Pfam profil...    26   8.6  

>At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family
           protein 
          Length = 477

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -2

Query: 128 PPARPRQSPRHNRHHQDYHSEYGCEPECS 42
           P     Q P H+ HH  +H E   EP  S
Sbjct: 326 PQPETHQYPHHHPHHHHHHHELAPEPSLS 354


>At3g22440.1 68416.m02836 hydroxyproline-rich glycoprotein family
           protein identical to hydroxyproline-rich glycoprotein
           [Arabidopsis thaliana] gi|9293881|dbj|BAB01784
          Length = 532

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 125 PARPRQSPRHNRHHQDYHSEY 63
           PA P   P H++HHQ +H ++
Sbjct: 510 PAPPVYHPHHHQHHQFHHQQH 530


>At4g38550.1 68417.m05458 expressed protein
          Length = 612

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 128 PPARPRQSPRHNRHHQD 78
           PP +P ++P H R HQD
Sbjct: 291 PPPQPYRTPDHRRSHQD 307


>At2g44190.1 68415.m05497 expressed protein  contains Pfam profile:
           PF04484 family of unknown function (DUF566)
          Length = 474

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -2

Query: 107 SPRHNRHHQDYHSEYG--CEPECSLREGDGERP 15
           SPRH+  HQ+  S        +  ++EGD  RP
Sbjct: 66  SPRHHHQHQNQRSTSAQRMRRQLKMQEGDENRP 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,665,223
Number of Sequences: 28952
Number of extensions: 53704
Number of successful extensions: 198
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 467982008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)