Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_L19
(492 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49909-4|CAA90108.1| 876|Caenorhabditis elegans Hypothetical pr... 31 0.60
AY303577-1|AAP57299.1| 876|Caenorhabditis elegans cell death-re... 31 0.60
U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily ass... 29 1.8
U80446-3|AAL77180.1| 889|Caenorhabditis elegans Nuclear pore co... 28 3.2
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co... 28 3.2
Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical pr... 27 7.4
U58761-2|AAB00713.1| 308|Caenorhabditis elegans Hypothetical pr... 27 7.4
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 27 9.8
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 9.8
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 9.8
AF024494-13|AAB70328.1| 398|Caenorhabditis elegans Nuclear horm... 27 9.8
>Z49909-4|CAA90108.1| 876|Caenorhabditis elegans Hypothetical
protein C14A4.4a protein.
Length = 876
Score = 30.7 bits (66), Expect = 0.60
Identities = 23/109 (21%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Frame = +1
Query: 145 VGYINAFKHYLK----PYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEI 312
V +N F Y+ YP+ L ++ ++ DVV++K D+ N++ +E
Sbjct: 371 VHVVNLFDTYVAMKKLKYPKFSLAYLTLRFADVVLDKQYQLADWRARPLRNAMINYARED 430
Query: 313 KTSYPHNFKVRQPRLNHKPFSVTIDVXSDIATDAVIKIFLGPKYNDXGF 459
+++ + + +L + +V S+ ++D IK++ P +N G+
Sbjct: 431 THYLLYSYDMLREQLLKQDTKDLANVYSE-SSDLCIKVYKKPVFNPKGY 478
>AY303577-1|AAP57299.1| 876|Caenorhabditis elegans cell
death-related nuclease 3 protein.
Length = 876
Score = 30.7 bits (66), Expect = 0.60
Identities = 23/109 (21%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Frame = +1
Query: 145 VGYINAFKHYLK----PYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEI 312
V +N F Y+ YP+ L ++ ++ DVV++K D+ N++ +E
Sbjct: 371 VHVVNLFDTYVAMKKLKYPKFSLAYLTLRFADVVLDKQYQLADWRARPLRNAMINYARED 430
Query: 313 KTSYPHNFKVRQPRLNHKPFSVTIDVXSDIATDAVIKIFLGPKYNDXGF 459
+++ + + +L + +V S+ ++D IK++ P +N G+
Sbjct: 431 THYLLYSYDMLREQLLKQDTKDLANVYSE-SSDLCIKVYKKPVFNPKGY 478
>U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily
assigned gene nameprotein 59 protein.
Length = 1592
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -1
Query: 351 WLTNLEVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNIIDFNADEM 202
W+TNL + NL+F +Y + G L ++ + + +++ F EM
Sbjct: 142 WITNLHYAFQDEKNLYFVMDYYIGGDMLTLLSKFVDHIPESMAKFYIAEM 191
>U80446-3|AAL77180.1| 889|Caenorhabditis elegans Nuclear pore
complex protein protein6, isoform b protein.
Length = 889
Score = 28.3 bits (60), Expect = 3.2
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 50 NHSTSTPSCPVRLTFTKPHFETLHSISYIT--GLWVTLTHSSIT 175
+HS STP P+R + T H + ++ISY T G V +T S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230
>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore
complex protein protein6, isoform a protein.
Length = 1562
Score = 28.3 bits (60), Expect = 3.2
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 50 NHSTSTPSCPVRLTFTKPHFETLHSISYIT--GLWVTLTHSSIT 175
+HS STP P+R + T H + ++ISY T G V +T S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230
>Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical
protein F46F3.4 protein.
Length = 769
Score = 27.1 bits (57), Expect = 7.4
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 2 NDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHSISYIT 139
++L K++ H + STS+ P +TF+ P FE + S +T
Sbjct: 332 SELSKMASTDPHSNHSSPSTSSQKAPTLITFSPPSFEQKINSSTMT 377
>U58761-2|AAB00713.1| 308|Caenorhabditis elegans Hypothetical
protein C01F1.5 protein.
Length = 308
Score = 27.1 bits (57), Expect = 7.4
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 49 KPFDKHTFMPSALDFYQTALRDPAFYQLYNR 141
KP K F PS DF + LRD AF Q+ R
Sbjct: 56 KPVQKVYFWPSLTDFEKNVLRD-AFAQIGRR 85
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 336 EVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNI 226
E++ + LFF Q SG++L ++ EC ++ +I
Sbjct: 4711 ELLTEVEVELFFSQAEVFSGLELDLLMECSEYVTTSI 4747
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 336 EVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNI 226
E++ + LFF Q SG++L ++ EC ++ +I
Sbjct: 4872 ELLTEVEVELFFSQAEVFSGLELDLLMECSEYVTTSI 4908
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 336 EVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNI 226
E++ + LFF Q SG++L ++ EC ++ +I
Sbjct: 6154 ELLTEVEVELFFSQAEVFSGLELDLLMECSEYVTTSI 6190
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 336 EVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNI 226
E++ + LFF Q SG++L ++ EC ++ +I
Sbjct: 4711 ELLTEVEVELFFSQAEVFSGLELDLLMECSEYVTTSI 4747
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 336 EVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNI 226
E++ + LFF Q SG++L ++ EC ++ +I
Sbjct: 4872 ELLTEVEVELFFSQAEVFSGLELDLLMECSEYVTTSI 4908
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 336 EVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNI 226
E++ + LFF Q SG++L ++ EC ++ +I
Sbjct: 6174 ELLTEVEVELFFSQAEVFSGLELDLLMECSEYVTTSI 6210
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 336 EVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNI 226
E++ + LFF Q SG++L ++ EC ++ +I
Sbjct: 4711 ELLTEVEVELFFSQAEVFSGLELDLLMECSEYVTTSI 4747
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 336 EVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNI 226
E++ + LFF Q SG++L ++ EC ++ +I
Sbjct: 4872 ELLTEVEVELFFSQAEVFSGLELDLLMECSEYVTTSI 4908
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 336 EVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNI 226
E++ + LFF Q SG++L ++ EC ++ +I
Sbjct: 6174 ELLTEVEVELFFSQAEVFSGLELDLLMECSEYVTTSI 6210
>AF024494-13|AAB70328.1| 398|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 260 protein.
Length = 398
Score = 26.6 bits (56), Expect = 9.8
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Frame = -1
Query: 249 D*FLNDNIIDFNADEMKFLLRIRLQVMLECVNVTHNPVI*L----IECRVSKCGLVKV-- 88
D F N+ + N + MK ++ + E +N P L +EC K L+
Sbjct: 256 DYFFGLNVTNVNMESMKLKTQLHHNFVTEMINCLGTPFRRLQIDDVECAALKIILLLTPS 315
Query: 87 --KRT---GHEGVLVEWFRCCTEHM 28
KR G EGVL + CTE +
Sbjct: 316 CTKRAIYAGQEGVLAGLYTKCTEEL 340
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,698,590
Number of Sequences: 27780
Number of extensions: 204562
Number of successful extensions: 568
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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