Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_L19
(492 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g13260.1 68414.m01539 DNA-binding protein RAV1 (RAV1) identic... 28 3.9
At1g64290.1 68414.m07285 F-box protein-related contains TIGRFAM ... 27 5.2
At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH) domain... 27 6.9
At3g61160.2 68416.m06845 shaggy-related protein kinase beta / AS... 27 6.9
At3g61160.1 68416.m06844 shaggy-related protein kinase beta / AS... 27 6.9
At5g09280.1 68418.m01075 pectate lyase family protein similar to... 27 9.1
At5g05390.1 68418.m00581 laccase, putative / diphenol oxidase, p... 27 9.1
At1g25300.1 68414.m03140 octicosapeptide/Phox/Bem1p (PB1) domain... 27 9.1
>At1g13260.1 68414.m01539 DNA-binding protein RAV1 (RAV1) identical
to SP|Q9ZWM9 DNA-binding protein RAV1 {Arabidopsis
thaliana}, RAV1 GI:3868857 from [Arabidopsis thaliana]
Length = 344
Score = 27.9 bits (59), Expect = 3.9
Identities = 21/75 (28%), Positives = 35/75 (46%)
Frame = +1
Query: 79 SALDFYQTALRDPAFYQLYNRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFF 258
SA ++ A+ +L ++ +A KH+ P P + GV +N V V F
Sbjct: 183 SAEALFEKAVTPSDVGKLNRLVIPKHHAEKHF--PLPSSNVSVKGVLLNFEDVNGKVWRF 240
Query: 259 DYSQFDATNSVFLTK 303
YS ++++ S LTK
Sbjct: 241 RYSYWNSSQSYVLTK 255
>At1g64290.1 68414.m07285 F-box protein-related contains TIGRFAM
TIGR01640 : F-box protein interaction domain;
Length = 364
Score = 27.5 bits (58), Expect = 5.2
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = -1
Query: 357 ESWLTNLEVVWVTSLNLFFGQEYTVSG--IKLAIVKECD*FLNDNI-IDF 217
ESW NL ++ ++ +F Q Y V G ++ + V E N+ + IDF
Sbjct: 39 ESWFVNLNLLRTNRISGYFIQHYIVKGHELRTSFVHERSDLQNNGVSIDF 88
>At4g25940.1 68417.m03731 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Chain B, Crystal Structure Of N-Terminal Domain Of
Drosophila Ap180 (GP:13399617) [Drosophila
melanogaster]; supporting cDNA
gi|20465326|gb|AY096427.1|
Length = 601
Score = 27.1 bits (57), Expect = 6.9
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Frame = +1
Query: 115 PAFYQLYNRIVGYI---NAFKHYLKPYPQE---KLHF-VGVKINDVVVEKLVTFFDYSQF 273
PA QL R++G +A+ +YL Y K F + IND ++ + FF+ S+
Sbjct: 200 PALQQLLYRLIGCQPEGSAYSNYLIQYALALVLKESFKIYCAINDGIINLVDMFFEMSRH 259
Query: 274 DATNSVFLTKK 306
DA ++ + K+
Sbjct: 260 DAVKALNIYKR 270
>At3g61160.2 68416.m06845 shaggy-related protein kinase beta /
ASK-beta (ASK2) identical to shaggy-related protein
kinase beta SP:O23145 GI:2569931 from [Arabidopsis
thaliana]
Length = 438
Score = 27.1 bits (57), Expect = 6.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 430 LGPKYNDXGFPITLEENWHK 489
+ P+YND FP + WHK
Sbjct: 337 MNPRYNDFKFPQIKAQPWHK 356
>At3g61160.1 68416.m06844 shaggy-related protein kinase beta /
ASK-beta (ASK2) identical to shaggy-related protein
kinase beta SP:O23145 GI:2569931 from [Arabidopsis
thaliana]
Length = 431
Score = 27.1 bits (57), Expect = 6.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 430 LGPKYNDXGFPITLEENWHK 489
+ P+YND FP + WHK
Sbjct: 330 MNPRYNDFKFPQIKAQPWHK 349
>At5g09280.1 68418.m01075 pectate lyase family protein similar to
major pollen allergen Cup a 1 SP:Q9SCG9 from [Cupressus
arizonica]
Length = 297
Score = 26.6 bits (56), Expect = 9.1
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = -2
Query: 458 NPXSLYLGPKKILITASVAISDXTSMVTLKGLWLSRG*RTLKLCG*LVLISFLVKNTLLV 279
+P S +GP +I D +VT K +W+ TL C +L L + V
Sbjct: 100 HPPSSVMGPDSKIIQLGHMDGDAIRLVTAKKVWIDH--NTLYDCEDGLLDVTLGSTDVTV 157
Query: 278 ASNW 267
++NW
Sbjct: 158 SNNW 161
>At5g05390.1 68418.m00581 laccase, putative / diphenol oxidase,
putative similar to laccase [Populus balsamifera subsp.
trichocarpa][GI:3805960]
Length = 565
Score = 26.6 bits (56), Expect = 9.1
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +1
Query: 79 SALDFYQTALRDPAFYQLYNRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVV 237
S L AL P F+ + N + + A YLKP+ + L + DV++
Sbjct: 220 SLLRVINAALNQPLFFTVANHKLTVVGADASYLKPFTTKVLMLGPGQTTDVLL 272
>At1g25300.1 68414.m03140 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein similar to unknown protein
GI:4262226 from [Arabidopsis thaliana] contains Pfam
profile PF00564: PB1 domain
Length = 272
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 175 LKPYPQEK-LHFVGVKINDVVVEKLVTFFDY 264
+ P P EK LH++G + V+V + ++F D+
Sbjct: 21 IMPLPPEKSLHYIGGETRLVIVPRGISFLDF 51
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,076,666
Number of Sequences: 28952
Number of extensions: 187794
Number of successful extensions: 554
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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