Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_L18
(589 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0234 + 15187065-15188241,15188316-15188494 38 0.004
04_03_0649 - 18402976-18403220,18403305-18404499 38 0.008
08_01_0192 + 1594530-1594682,1594755-1594955,1595051-1595280,159... 30 1.2
05_03_0086 + 8279518-8280320,8280923-8281844 30 1.2
03_02_0517 + 9054816-9055655 29 2.7
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 27 8.4
04_04_1358 + 32869222-32869306,32869947-32870008,32870301-328703... 27 8.4
02_05_1001 + 33423562-33424098 27 8.4
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 38.3 bits (85), Expect = 0.004
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 309 YNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 419
++ + R AF NS++ LA GFDG+DL+W+ P
Sbjct: 129 FSRMASEKNLRRAFINSSIELARANGFDGLDLAWRFP 165
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 37.5 bits (83), Expect = 0.008
Identities = 13/30 (43%), Positives = 22/30 (73%)
Frame = +3
Query: 330 PQARTAFTNSALLLAEQYGFDGIDLSWQLP 419
P +R AF +A+ +A + GFDG+D++W+ P
Sbjct: 141 PASRAAFIGAAVKVARENGFDGLDVAWRFP 170
>08_01_0192 +
1594530-1594682,1594755-1594955,1595051-1595280,
1595596-1595766,1595902-1596007,1596339-1596545,
1596638-1596802
Length = 410
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 351 TNSALLLAEQYGFDGIDLSWQLPKRKPKKIRSSIGSFW 464
T +L+ E + FD L+W + R P +I++++ +W
Sbjct: 339 TKKMILVGEVFRFDLDTLTWSVIGRMPFRIKTALAGYW 376
>05_03_0086 + 8279518-8280320,8280923-8281844
Length = 574
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +3
Query: 315 LLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLPKR-KPKKIRSSIGSFWHSIKKTFGT 491
LL++ P R AFT A + + FDG+ +W L + P + + F T
Sbjct: 478 LLVKEPHKRIAFTRGATEIKQHPFFDGV--NWALVRSLTPPSVPEPV-DFRQYAAAASAT 534
Query: 492 TPVDDKESEH 521
TP D K E+
Sbjct: 535 TPKDKKPPEN 544
>03_02_0517 + 9054816-9055655
Length = 279
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +3
Query: 63 ENLKHVCCLRTWSLLFRSAPICCTNLPASKLTHIKWFHSMRIWTL 197
+++ H C+ W L S P+C LPA+ + + IW L
Sbjct: 154 KHVYHQDCILPWLSLRNSCPVCRRELPAAAAPESEADAGLTIWRL 198
>04_04_1630 - 34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 188 LDIDRAHANYRAITNLKRQFPQLRVFL 268
+ +D ANYRA+ L + FP ++ F+
Sbjct: 2373 ITLDTPGANYRAVWALSKYFPNVKTFV 2399
>04_04_1358 +
32869222-32869306,32869947-32870008,32870301-32870393,
32870640-32870761,32873139-32873167,32873586-32873891,
32873977-32874035,32874148-32874279,32874414-32874455,
32874560-32875093,32875189-32875379,32875538-32876027,
32876273-32876335,32876704-32876805,32876895-32877215,
32877294-32877386,32877484-32877585,32877718-32877822,
32877933-32878066,32878429-32878612,32879226-32879357,
32879447-32879559,32879628-32879709,32880328-32881992
Length = 1746
Score = 27.5 bits (58), Expect = 8.4
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = +3
Query: 324 ESPQARTAFTNSALLLAEQYGFDGIDLSWQLPKRKPKKIRSSIGSFW-HSIKKTFGTTPV 500
+ P ++ N A L + D + +P P+ IR +GS W +++K
Sbjct: 569 QCPTPQSHVDNHARKLVRKILEDSLMKLENMPANNPRTIRWELGSSWLQNLQKKDSPASE 628
Query: 501 DDKESEHREGFTAL 542
D K + H E T +
Sbjct: 629 DKKNAGHVEKETTI 642
>02_05_1001 + 33423562-33424098
Length = 178
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -2
Query: 207 CARSMSKFSLSETILYVSA--WMPADLYSRWVQNERA 103
CA S E + + S W PAD+ + WV ERA
Sbjct: 80 CALVHSHGPYGENLFHGSGVGWAPADVVAAWVSRERA 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,559,071
Number of Sequences: 37544
Number of extensions: 280748
Number of successful extensions: 827
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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