Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_L18
         (589 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   4e-06
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              48   4e-06
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              44   9e-05
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.003
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              35   0.057
SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)        31   0.53 
SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)           28   6.5  
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013)                    27   8.6  

>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 29/90 (32%), Positives = 45/90 (50%)
 Frame = +2

Query: 32  LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHA 211
           +CY+ + +  R    + LP D++P L  CTH++Y  A I   T K+ +   N D      
Sbjct: 401 VCYFTNWAQYRPDPVKFLPKDIDPLL--CTHIVYAFAKIDPATNKIGTYEWNDD-----R 453

Query: 212 NYRAITNLKRQFPQLRVFLTVGGDDDTEDP 301
            Y+ I +LK + P L+  L VGG +    P
Sbjct: 454 LYKEINDLKLKNPSLKTLLAVGGWNHESGP 483



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +3

Query: 309 YNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 419
           ++ ++ S   RT F +S L L+++Y FDG DL W+ P
Sbjct: 487 FSQMVASKSNRTTFISSLLQLSDKYDFDGFDLDWEYP 523


>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 829

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 28/82 (34%), Positives = 41/82 (50%)
 Frame = +2

Query: 35  CYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHAN 214
           CYY + S  R       P D++P L  CTH+L+  A +   T+K+    EN      H  
Sbjct: 25  CYYTNWSQYRPKGGTFWPEDIDPFL--CTHILFSFAKVNQTTHKLDIYEEN-----DHEL 77

Query: 215 YRAITNLKRQFPQLRVFLTVGG 280
           Y+ I  LK+  P+L+  + VGG
Sbjct: 78  YQRINALKKINPKLKTQIAVGG 99



 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 26/83 (31%), Positives = 42/83 (50%)
 Frame = +2

Query: 32  LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHA 211
           +CYY + S  R       P D++P L  CTH+++  + +   T+ M    +N D D    
Sbjct: 409 VCYYTNWSQYRPKGGTFWPEDIDPHL--CTHVIHSFSKVNLTTHVMEKYEKN-DFDL--- 462

Query: 212 NYRAITNLKRQFPQLRVFLTVGG 280
            Y+ I  LK+  P+L+  + VGG
Sbjct: 463 -YKRINALKKINPKLKTQIAVGG 484



 Score = 36.7 bits (81), Expect = 0.014
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +3

Query: 309 YNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLPKRKPKKIRSSIGSF 461
           ++ ++ + + R  F  SA+     +GFDG+DL W+ P  +    +S  G F
Sbjct: 109 FSKMVATKEKRAIFIKSAIETLRTHGFDGLDLDWEYPGMRGGSPKSDKGRF 159



 Score = 35.1 bits (77), Expect = 0.043
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +3

Query: 309 YNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLPKRKPKKIRSSIGSF 461
           ++ ++ + + R  F  SA+      GFDG+DL W+ P  +    +S  G F
Sbjct: 494 FSKMVATKEKRAIFIKSAIETLRTNGFDGLDLDWEYPGMRGGSPKSDKGRF 544


>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 270

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
 Frame = +2

Query: 32  LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGI-QADTYKMVSLNENLDIDRAH 208
           +CY+ + S  R+ +A+  P D+ PA   CTHL+Y  A I Q +   M   N+    D+ +
Sbjct: 22  VCYHTNWSQYRQGRAKFWPEDI-PA-DLCTHLMYSFAKINQKNELAMYEWND----DKLY 75

Query: 209 ANYRAITNLKRQFPQLRVFLTVGG 280
             + A   LK++ P+L+  L VGG
Sbjct: 76  PRFNA---LKQKNPELKTLLAVGG 96



 Score = 34.7 bits (76), Expect = 0.057
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +3

Query: 309 YNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 419
           ++ ++++   R  F +S + +   +GFDG+DL W+ P
Sbjct: 106 FSRMVKTAATRKVFIDSVIRILRTWGFDGLDLDWEYP 142


>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 25/83 (30%), Positives = 42/83 (50%)
 Frame = +2

Query: 32  LCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHA 211
           +CYY + +  R   A+  P +++P+L  CTH++Y  A + AD  K+     N       A
Sbjct: 25  VCYYTNWAQYR-GLAKYTPDNIDPSL--CTHIVYAFAKMNADNSKLAMFEWN-----DAA 76

Query: 212 NYRAITNLKRQFPQLRVFLTVGG 280
            Y+ + +LK     ++  L VGG
Sbjct: 77  MYKKVNDLKSS-SNMKTLLAVGG 98



 Score = 31.5 bits (68), Expect = 0.53
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 318 LLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 419
           ++ +   R  F + A+L    + FDG+DL W+ P
Sbjct: 109 MVSTASRRKIFIDDAILFLRNHMFDGLDLDWEYP 142


>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 569

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +3

Query: 309 YNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 419
           ++ ++ +  +R  F +S++ +  Q+ FDG DL W+ P
Sbjct: 218 FSRMVRTAASRKVFIDSSIAMLRQWNFDGFDLDWEYP 254


>SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)
          Length = 561

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 318 LLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 419
           ++ +   R  F + A+L    + FDG+DL W+ P
Sbjct: 33  MVSTASRRKIFIDDAILFLRNHMFDGLDLDWEYP 66


>SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)
          Length = 1301

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 495  PVDDKESEHREGFTALVREM 554
            P DDK +E R  FT+L++EM
Sbjct: 1066 PEDDKPAEQRMSFTSLLKEM 1085


>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 7645

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 498  VDDKESEHREGFTALVREMKQALNVKP 578
            +DDKE E  E FT  +    + +NVKP
Sbjct: 2157 IDDKEIEDLEAFTVTLSSDDKRVNVKP 2183


>SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013)
          Length = 872

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = -1

Query: 409 QDRSIPSKPYCSARRRAELVKAVRACGDSNKRLYXLWIFSVVITSHCQEHAQLR 248
           Q  S+PS P   AR    L++    CG  +      W     I+S C  +A LR
Sbjct: 390 QVHSVPSSPSTPARHGRPLIEEHSDCGTMSSDTNVTW-----ISSDCPSNAHLR 438


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,793,513
Number of Sequences: 59808
Number of extensions: 325453
Number of successful extensions: 1180
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)