Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_L14
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi...    46   4e-06
SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo...    41   1e-04
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    26   3.7  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    26   4.9  
SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    25   6.4  

>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
           Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 46.0 bits (104), Expect = 4e-06
 Identities = 22/45 (48%), Positives = 29/45 (64%)
 Frame = +3

Query: 3   QGPITAEEVNHMLANKNMENKFPLFTAVFRICRGELKPNDFIDCI 137
           QG  TA+EV   L N+N  ++FPLFTAV+RI    L PN  ++ I
Sbjct: 329 QGAATAKEVYEFLDNQNKVSEFPLFTAVYRIVYEGLPPNKLLEAI 373


>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
           Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 385

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 18/42 (42%), Positives = 26/42 (61%)
 Frame = +3

Query: 3   QGPITAEEVNHMLANKNMENKFPLFTAVFRICRGELKPNDFI 128
           QG  T+++V+  L  K+M   FPLFTAV+ I   ++ P D I
Sbjct: 325 QGAATSKDVHEFLLTKDMVKDFPLFTAVYNISYEDMDPKDLI 366


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 27  VNHMLANKNMENKFPLFTAVF 89
           VNH L  KN+ +KFP   +V+
Sbjct: 284 VNHQLPTKNLLSKFPNLASVY 304


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 97  QIRNTAVNNGNLFSMFLLASIWLTSSAVI 11
           Q+R+TAV   +++  FLLA++  T  + +
Sbjct: 299 QVRSTAVGTSSIYYSFLLATLLSTKPSAL 327


>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 181 LVTMSLDSSLDH*KTLSIKIICRIENKLTYYC 276
           + T+ +   +D  K  SIKI+  +EN   Y C
Sbjct: 170 IATLDVQKEIDFCKKASIKILGIVENMSGYIC 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,218,671
Number of Sequences: 5004
Number of extensions: 39371
Number of successful extensions: 84
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)