Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_L14
         (604 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0341 - 42855667-42855849,42855933-42855981,42856165-428562...    37   0.011
05_04_0272 + 19624898-19625071,19625909-19626370,19626471-196269...    28   5.0  
07_02_0028 + 11964941-11964991,11965259-11966101,11966249-119665...    27   8.7  

>01_07_0341 -
           42855667-42855849,42855933-42855981,42856165-42856219,
           42856290-42856410,42856495-42856532,42856612-42856675,
           42856778-42856885,42857066-42857187,42857544-42857616,
           42857700-42857776,42858521-42858632
          Length = 333

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 3   QGPITAEEVNHMLANKNMENKFPLFTAVFRICRGELKPNDFID 131
           QG  TA+EV  +L  +  +  FPL + V  IC G+L P   ++
Sbjct: 273 QGVSTAKEVYEVLTYRGWQELFPLLSTVHEICIGQLPPTSIVE 315


>05_04_0272 +
           19624898-19625071,19625909-19626370,19626471-19626905,
           19626992-19627237,19627318-19628085,19628245-19628417,
           19629337-19629440,19629525-19630127,19630210-19630214
          Length = 989

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 118 TTSLTASAVIPSTCKTYSFYPLVTMSLDSSL 210
           TTS+T    +PST +  S Y L+  SLD  L
Sbjct: 849 TTSVTTVDTLPSTIRPLSSYSLLDGSLDDGL 879


>07_02_0028 +
           11964941-11964991,11965259-11966101,11966249-11966560,
           11966640-11967073,11967500-11967941
          Length = 693

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 164 VLHVLGMTADAVNEVVWLQFASANTKYGGEQWKL-IFHVLVSEHMVDLF 21
           +L++ G    ++  +    F S N      +WKL +FH   S +M DLF
Sbjct: 348 LLNLQGPPLGSIENIELAMFRSKNFDRWWGEWKLYLFHQPASMYMTDLF 396


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,629,191
Number of Sequences: 37544
Number of extensions: 229945
Number of successful extensions: 443
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)