Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_L14
         (604 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53243| Best HMM Match : Sec34 (HMM E-Value=9.9e-05)                 33   0.13 
SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.72 
SB_21284| Best HMM Match : F5_F8_type_C (HMM E-Value=1.8e-21)          28   5.1  
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_53243| Best HMM Match : Sec34 (HMM E-Value=9.9e-05)
          Length = 530

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = +3

Query: 15  TAEEVNHMLANKNMENKFPLFTAVFRICRGELKPNDFIDCIRSHPEHM*DV*LLPACY 188
           T++ +N+  A  N EN F LF   FR C   +K +  +  +  HP  + +  L+ ACY
Sbjct: 67  TSQVLNNKDAG-NAENSFALFYGKFRTCAPRIKVSGTVSPLFCHPGRVLENSLIFACY 123


>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4247

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 12   ITAEEVNHMLANKNMENKFPLFTAVFRICRGELKPNDFIDCIRSHPEHM 158
            ITAE ++ +L     EN  P FTA+   C  E++        R HP+H+
Sbjct: 993  ITAEALSSLLKMTEFENLVPRFTAIVPPCWSEVQQE---QQQRRHPQHL 1038


>SB_21284| Best HMM Match : F5_F8_type_C (HMM E-Value=1.8e-21)
          Length = 564

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +1

Query: 1   YKDLSQLKRSTIC-SLTRTWKISFHCSPPYFVFAEAN*S-QTTSLTASAVIPSTCKTYSF 174
           + D+ +  R T C S T T + S   SP Y     A  S QT S+TA   +P + KTY  
Sbjct: 434 FSDIDECLRRTRCDSTTTTCQNSIGGSPGYTCECIAGTSVQTVSITARQ-LPLSAKTYPE 492

Query: 175 YPLVTMSLDSS 207
              V  + DS+
Sbjct: 493 TTPVFAATDSN 503


>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3066

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 220 KTLSIKIICRIENKLTYYCE*HMYY 294
           KT  I + C +EN+L + CE   Y+
Sbjct: 147 KTFLIYLFCAVENRLKFMCETDEYF 171


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,421,443
Number of Sequences: 59808
Number of extensions: 290531
Number of successful extensions: 776
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)