Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_L13
         (240 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.03 |||microfibrillar-associated protein family protein|...    25   1.0  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   1.0  
SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch...    25   1.8  
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    24   3.1  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    24   3.1  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    24   3.1  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    24   3.1  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    23   4.1  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    23   4.1  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    23   5.4  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    23   5.4  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    23   5.4  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    23   5.4  
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    23   7.1  
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    23   7.1  
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    22   9.4  
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    22   9.4  
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    22   9.4  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    22   9.4  
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...    22   9.4  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    22   9.4  
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git...    22   9.4  

>SPAC1782.03 |||microfibrillar-associated protein family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = -3

Query: 187 TSSHIETK-SVESGGTSRSCTASSVSICVESTVTLSHSARTLLLPDN-K*MIVKNRETAR 14
           ++S  ET  S   GG++ + ++S      +S   +    RTLLLP      ++KNR  A 
Sbjct: 84  SASEYETDASSAEGGSNSAASSSEEEDSSDSEYEMELRRRTLLLPPKFTSKVIKNRAKAN 143

Query: 13  D 11
           +
Sbjct: 144 E 144


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 90  VTVLSTQIDTLLAVQDREV 146
           V VL T IDT++  +DRE+
Sbjct: 578 VKVLGTPIDTIITTEDREL 596


>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
           Spo14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 39  IIYLLSGSRSVRAECDNVTVLSTQIDTLLAVQDREVPPDSTLLVSI 176
           +I +     S+R    ++T LS      L V D ++ PDS  LVS+
Sbjct: 271 MIIVAGADCSIRFMSLDLTKLSQVYKHSLPVTDMQLSPDSEALVSV 316


>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 87  NVTVLSTQIDTLLAVQDREVPPDSTLLVSIWLEV 188
           ++   ++ I T+  +   EVPPD T     W+++
Sbjct: 255 SIEFANSPISTIKLLYQLEVPPDFTKSSEDWMDI 288


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 240 SASSRIEVIPLVEPWRASLPAILRLRVSSREAPPGPVL 127
           SAS R  V P+   +R SLP I    +   E  P  V+
Sbjct: 304 SASVRPTVSPIGTSFRQSLPDISAFGIPKTETNPSEVV 341


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 214  PAR*TVACLTSSHIETKSVESGGTSRSCTASSVSICVESTVTLS 83
            P+R T   L+ +  ++ S+    TS     SS  +  +ST+T S
Sbjct: 3797 PSRMTSPSLSETIPQSSSISEASTSNPNILSSTVLSFDSTITNS 3840


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 135 DREVPPDSTLLVSIWLEVRHATVQRAGSPL 224
           D+ +PP+  +   +W  V      R+G PL
Sbjct: 300 DKVIPPEYAIQEVLWSHVVEVIQSRSGLPL 329


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 129 LQAVCRFVLRAPSHCRTPLAHSCYRTIS 46
           L +  R  L APS  R P  +S Y T++
Sbjct: 89  LSSCIRKTLLAPSSTRVPSKNSSYETLT 116


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -3

Query: 202 TVACLTSSHIETKSVESGGTSRSCTASSVSICVESTVTLSHSARTL 65
           T + LTSS   + S+ S  T+ S  ASS SI   S  + S ++ +L
Sbjct: 105 TSSSLTSSSATSSSLASSSTTSSSLASS-SITSSSLASSSITSSSL 149


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 156 STLLVSIWLEVRHATVQRAGS 218
           S+L VSIWL      ++RAG+
Sbjct: 169 SSLTVSIWLRFLVTQLERAGA 189


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 43  STYCPVAGVCERSATM*RCSQHKSTHCLQYRTGRCLPTRHS 165
           S+  PV+     ++T  R S H S+H L   + + + T  S
Sbjct: 414 SSSAPVSSAFYHNSTSSRSSSHSSSHSLSSLSSKPILTASS 454



 Score = 22.6 bits (46), Expect = 7.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 187 TSSHIETKSVESGGTSRSCTASSVSICVESTVTLSHS 77
           +SSH  + S+ S  +    TASS S+   S+ T   S
Sbjct: 432 SSSHSSSHSLSSLSSKPILTASSSSLLTSSSHTYERS 468


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 127  QYRTGRCLPTRHS*SQYGWK*GTPRFN-ERDHLY 225
            +YR  R  P  HS S+Y +  G   F+ +R + Y
Sbjct: 1728 RYRAERLNPDSHSPSEYSFDSGDYEFDPQRSYYY 1761


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 134 LYCKQCVDLC 105
           ++CK CVD+C
Sbjct: 73  IFCKLCVDIC 82


>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +1

Query: 52  CPVAGVCERSATM*RCSQHKSTHCLQYRTGRC 147
           C + G C+  +      +H +T  L   TG C
Sbjct: 44  CVIMGFCQTESVFFPRPKHNATFLLAITTGFC 75


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +1

Query: 52  CPVAGVCERSATM*RCSQHKSTHCLQYRTGRC 147
           C + G C+  +      +H +T  L   TG C
Sbjct: 44  CVIMGFCQTESVFFPRPKHNATFLLAITTGFC 75


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 65  ECASGVRQCD 94
           ECA G+R CD
Sbjct: 364 ECAVGIRNCD 373


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 105 TQIDTLLAVQDREVPPDSTL 164
           + +DT+L  +DR + PD  L
Sbjct: 138 SMLDTVLVARDRYLAPDGLL 157


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 3   KMESRAVSLFFTIIYLLSGSRSVRAECDNVTVLSTQIDTLLAV 131
           ++  R   +F+TI+YL+     V A    V ++  +I T LA+
Sbjct: 82  RIGKRVSIMFWTIVYLIGIILQVTAVPSWVQIMVAKIWTGLAI 124


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 65  ECASGVRQCD 94
           ECA G+R CD
Sbjct: 364 ECAVGIRNCD 373


>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 8   GITCCFSVFYYHLLIVR*QECASGVRQCDGALN 106
           G+   FSVFYY +L    + C    +  D A++
Sbjct: 174 GLALNFSVFYYEILNSPDRACYLAKQAFDEAIS 206


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 240 SASSRIEVIPLVEPWRASLPAILRLRVSSREAP 142
           + +S  E IPL+EP     P +L  R+SS   P
Sbjct: 279 TTASPPEQIPLMEPQVYVNPQVLPGRLSSLSKP 311


>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
           Git5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 305

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 125 CSTGPGGASRLDTLSLNMAGSEARHGSTSGI 217
           C+T PG  S ++++S   + ++   G+  GI
Sbjct: 183 CATFPGNTSDINSISFFPSNADFVTGAEDGI 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,040,566
Number of Sequences: 5004
Number of extensions: 17935
Number of successful extensions: 56
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)