Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_L13
(240 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0616 - 12160899-12161506,12161698-12161821,12161974-121620... 30 0.23
11_04_0184 - 14645630-14645905,14645997-14646701 28 0.92
07_01_0814 - 6464072-6464544,6464770-6465208 27 2.8
02_05_0510 + 29637160-29637506,29637714-29637775,29638047-296381... 27 2.8
02_05_0483 - 29391929-29392256,29393048-29393148,29393640-293938... 23 3.3
11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223... 26 3.7
06_03_0365 + 19918003-19918401 26 3.7
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 26 3.7
03_02_0503 + 8951824-8952642,8953159-8953770,8953938-8954042 26 3.7
08_01_1010 - 10215625-10216335,10216372-10216473 26 4.9
01_01_0754 - 5823076-5823089,5823797-5823911,5823992-5824045,582... 26 4.9
10_02_0058 - 4695400-4695648,4695846-4696112,4706026-4706430 25 6.5
10_01_0148 + 1730930-1731131,1731387-1731826 25 6.5
09_03_0029 + 11724581-11724583,11726413-11726610,11726874-117270... 25 6.5
09_02_0357 + 7788946-7789326,7789620-7789997 25 6.5
07_01_0661 + 4968089-4969741 25 6.5
11_06_0264 - 21785450-21786928 25 8.5
09_04_0475 - 17913982-17914772,17914830-17915156,17915323-179154... 25 8.5
07_03_0382 + 17470508-17470807,17471449-17474517 25 8.5
07_01_0917 + 7735696-7735896,7735907-7736404,7736481-7736813,773... 25 8.5
01_01_0119 + 1102872-1104170,1105419-1105516,1105849-1106206 25 8.5
>02_02_0616 -
12160899-12161506,12161698-12161821,12161974-12162083,
12162119-12162271,12162545-12162779
Length = 409
Score = 30.3 bits (65), Expect = 0.23
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 65 ECASGVRQCDGALNTNRHTACSTGPGGASRLDTLS--LNMAGSEARHGSTSGITS 223
E A+ R+ N NR+ + GP G SR DT S L G +A SG TS
Sbjct: 182 EKAANARKTAANFNRNRNLNLNAGPPGTSRPDTFSVILKFNGKKAVGLIDSGSTS 236
>11_04_0184 - 14645630-14645905,14645997-14646701
Length = 326
Score = 28.3 bits (60), Expect = 0.92
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +2
Query: 74 SGVRQCDGALNTNRHTACSTGPGGASRLDTLSLNMAGSEARHGSTSG 214
+G G L T RH A G G + DT++ G+ A HG+T+G
Sbjct: 159 TGAHHGAGGLGT-RHMA---GHGATTTPDTMAYGTTGTGAPHGATAG 201
>07_01_0814 - 6464072-6464544,6464770-6465208
Length = 303
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -1
Query: 216 IPLVEPWRASLPAILRLRVSSREAPPGPVLQAVCRFVLRAPSHCR 82
+P + A A+ R+ S + PP +L+ CR + P CR
Sbjct: 48 VPSCRNYIARWCAVAGGRLDSGKQPPRQLLEPCCRELAAVPMQCR 92
>02_05_0510 +
29637160-29637506,29637714-29637775,29638047-29638161,
29638296-29638419,29638604-29638684,29639122-29639463,
29639562-29639728,29639810-29640639,29641103-29642568
Length = 1177
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 66 SVRAECDNVTVLSTQIDTLLAVQDREVPPDSTLLVSIWLE 185
S + D ++ L +A D+ V PDS +LVS+ L+
Sbjct: 586 STHLDIDQISPLRIVFLASVAFHDQSVKPDSPMLVSVSLQ 625
>02_05_0483 -
29391929-29392256,29393048-29393148,29393640-29393834,
29394124-29394240,29394376-29394447,29394840-29394950,
29395029-29395127,29395991-29396047,29396607-29397008,
29397249-29397303,29397725-29397809,29398023-29398130,
29398229-29398295,29398717-29398875,29399277-29399405
Length = 694
Score = 23.0 bits (47), Expect(2) = 3.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 128 STGPGGASRLDTLSLNMAGSEARHGS 205
+T SR ++LS + EARHGS
Sbjct: 213 ATVANAMSRQNSLSFTSSVDEARHGS 238
Score = 21.8 bits (44), Expect(2) = 3.3
Identities = 7/13 (53%), Positives = 12/13 (92%)
Frame = +2
Query: 182 GSEARHGSTSGIT 220
GS+A+HG++S +T
Sbjct: 237 GSDAKHGASSSMT 249
>11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,
2233053-2233513,2233593-2233717,2233801-2234098,
2235004-2236234,2236562-2237233,2237329-2238539
Length = 1884
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 122 ACSTGPGGASRLDTLSLNMAGSEARHGSTSGITSMRLL 235
AC + GG + LNMA + A GS ++ MRL+
Sbjct: 946 ACQSSAGGTKK--ACFLNMATANASKGSARILSGMRLI 981
>06_03_0365 + 19918003-19918401
Length = 132
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +3
Query: 12 SRAVSLFFTIIYLLSGSRSVRAECDNV 92
SRA L ++ LL S SVRAE D V
Sbjct: 4 SRAALLVAVLLLLLVSSLSVRAEADQV 30
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +3
Query: 60 SRSVRAECDNVTVLSTQIDTLLAVQDREVPPDSTL 164
S S A +N TV+STQI TL +DR P D+ +
Sbjct: 4181 SPSGAATEENNTVVSTQIPTLAESEDR-TPADTAI 4214
>03_02_0503 + 8951824-8952642,8953159-8953770,8953938-8954042
Length = 511
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 213 PLVEPWRASLPAILRLRVSSREAPPGPVLQAVC 115
P+ W LPA+ L +SR P + QA+C
Sbjct: 303 PISPNWLKRLPAVRSLVGASRHDPSRTLQQAIC 335
>08_01_1010 - 10215625-10216335,10216372-10216473
Length = 270
Score = 25.8 bits (54), Expect = 4.9
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = -3
Query: 193 CLTSSHIETKSVESGGTSRSCTASSVSICVESTVTLSHSARTLLLPD 53
C SS I+ V SGG C ASS S + + S R PD
Sbjct: 27 CCGSSRIQELGVGSGGEGCFCCASSPGYTPSSPMVMG-SPRRAASPD 72
>01_01_0754 -
5823076-5823089,5823797-5823911,5823992-5824045,
5825629-5827251
Length = 601
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -1
Query: 225 IEVIPLVEPWRASLPAILRLRVSSREAPPGP 133
+ + PL P R+ P+ LRL PP P
Sbjct: 20 LPIAPLAAPRRSRFPSTLRLASFDASPPPPP 50
>10_02_0058 - 4695400-4695648,4695846-4696112,4706026-4706430
Length = 306
Score = 25.4 bits (53), Expect = 6.5
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +2
Query: 65 ECASG---VRQCDGALNTNRHTACSTGPGGASRLDTLSLNMAGSEARHGSTSGITSMRLL 235
+CASG + A+N H P ASR D L++ + + TS +T + LL
Sbjct: 27 DCASGPNALALISTAINAVHHHLLGPAPAAASRCDELTV-LLNDLPTNDFTSAMTGLPLL 85
>10_01_0148 + 1730930-1731131,1731387-1731826
Length = 213
Score = 25.4 bits (53), Expect = 6.5
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +2
Query: 77 GVRQCDGALNTNRHTACSTGPGGASRLDTLSLNMAGSEARHGSTSGITSM 226
G +CD +T R C G A RL S G EAR +G+T +
Sbjct: 148 GPARCDARRDTTR---CGCGAASAVRLGLGSDVAEGKEARLRCGTGVTGV 194
>09_03_0029 +
11724581-11724583,11726413-11726610,11726874-11727038,
11727217-11727283,11727645-11727812,11728070-11728194,
11728288-11728446,11728552-11728714,11728795-11728920,
11729000-11729083,11729161-11729528,11729613-11729813,
11729909-11730018,11730113-11730197,11730360-11730488,
11730580-11730667,11730805-11730893,11730968-11731267
Length = 875
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +1
Query: 4 KWNHVLFLCFLLSSTYCPVAGVCERSATM*RCSQHKSTHCLQ 129
+W +L L F L GV +R RC Q K T LQ
Sbjct: 478 EWAFLLMLAFYLDQVSPVGGGVRKRPLFFFRCLQKKHTPSLQ 519
>09_02_0357 + 7788946-7789326,7789620-7789997
Length = 252
Score = 25.4 bits (53), Expect = 6.5
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 100 SQHKSTHCLQYRTGRC 147
+ HKS C+++R GRC
Sbjct: 34 ANHKSVLCMKWREGRC 49
>07_01_0661 + 4968089-4969741
Length = 550
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -1
Query: 225 IEVIPLVEPWRASLPAILRLRVSSREAPPGPVLQAVCRFVLRAPSH 88
++ P P SLPA+L P G L A+ + APSH
Sbjct: 53 LQSTPSPPPPHVSLPAVLSAAAFLSALPEGRQLHALAAKLGLAPSH 98
>11_06_0264 - 21785450-21786928
Length = 492
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 198 WRASLPAILRLRVSSREAPP 139
WRA+ A RLR+S+ PP
Sbjct: 62 WRAAAAAFRRLRLSTPRQPP 81
>09_04_0475 -
17913982-17914772,17914830-17915156,17915323-17915493,
17915583-17915824,17915862-17916049,17916184-17916253,
17916329-17916612
Length = 690
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +1
Query: 37 LSSTYCPVAGVCERSATM*RCSQHKSTHCLQYRTGRCLPTRHS*SQYGW 183
L +T P AG+CE + +CS + + + G C+P + W
Sbjct: 267 LDNTTYPCAGICENTIGSYKCSCPQGQN--ELARGVCVPDQKIQKSQAW 313
>07_03_0382 + 17470508-17470807,17471449-17474517
Length = 1122
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 116 HTACSTGPGGASRLDTLSLNMAGSEARHGSTSG 214
H A G A RLD + AG+EAR +G
Sbjct: 26 HAAADELRGLARRLDAVGAAAAGAEAREARDAG 58
>07_01_0917 +
7735696-7735896,7735907-7736404,7736481-7736813,
7736991-7737314,7737367-7737836,7738165-7738447,
7738527-7738640
Length = 740
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -1
Query: 171 RLRVSSREAPPGPVLQ--AVCRFVLRAPSHCRTPLA 70
R+R S +A PGP++Q C V+R P+A
Sbjct: 329 RIRDRSTDATPGPIVQERTSCTLVVRVTPGFAIPVA 364
>01_01_0119 + 1102872-1104170,1105419-1105516,1105849-1106206
Length = 584
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 202 TVACLTSSHIETKSVESGGTSRSCTAS 122
TVAC T H ++ G+SR+ T +
Sbjct: 482 TVACATCIHAWNNRIKHSGSSRTATTA 508
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,578,385
Number of Sequences: 37544
Number of extensions: 149078
Number of successful extensions: 485
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 14,793,348
effective HSP length: 58
effective length of database: 12,615,796
effective search space used: 264931716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -