Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_L13
(240 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1215| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.3
SB_47561| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.8
SB_16688| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.8
SB_17786| Best HMM Match : MSSP (HMM E-Value=1.8) 27 3.1
SB_59015| Best HMM Match : Arif-1 (HMM E-Value=0.62) 26 4.1
SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07) 26 4.1
SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2) 26 4.1
SB_5034| Best HMM Match : Extensin_2 (HMM E-Value=0.0055) 26 5.4
SB_54139| Best HMM Match : DUF1353 (HMM E-Value=6.5) 26 5.4
SB_39796| Best HMM Match : VWA (HMM E-Value=0) 26 5.4
SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.2
SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.2
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.2
SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41) 25 7.2
SB_7361| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.2
SB_33275| Best HMM Match : PDZ (HMM E-Value=5.2e-11) 25 9.5
SB_19455| Best HMM Match : Amino_oxidase (HMM E-Value=0.0003) 25 9.5
SB_8059| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_58219| Best HMM Match : SOCS_box (HMM E-Value=2e-07) 25 9.5
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_30776| Best HMM Match : HLH (HMM E-Value=1.7e-13) 25 9.5
SB_4563| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
>SB_1215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +2
Query: 89 CDGALNTNRHTA--CSTGPGGASRLDTLSLNMAGSEARHGST 208
C G + RHT C G GGA R TL + GS ARH T
Sbjct: 508 CIGGHGSARHTITLCIGGHGGARRTITLCIGGHGS-ARHTIT 548
>SB_47561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 204 EPWRASLPAILRLRVSSREAPPGPVLQAV 118
E R L A+L + SS++ PPGP L +
Sbjct: 16 EEHRRQLQALLMEKTSSQDYPPGPALNGL 44
>SB_16688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 204 EPWRASLPAILRLRVSSREAPPGPVLQAV 118
E R L A+L + SS++ PPGP L +
Sbjct: 86 EEHRRQLQALLMEKTSSQDYPPGPALNGL 114
>SB_17786| Best HMM Match : MSSP (HMM E-Value=1.8)
Length = 419
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +2
Query: 89 CDGALNTNRHTA--CSTGPGGASRLDTLSLNMAGSEARHGST 208
C G + RHT C G GGA R TL + G+ ARH T
Sbjct: 239 CIGGHGSARHTITLCIGGHGGARRTITLCIGGHGN-ARHTIT 279
>SB_59015| Best HMM Match : Arif-1 (HMM E-Value=0.62)
Length = 526
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -3
Query: 178 HIETKSV-ESGGTSRSCTASSVSICVESTVTLSHSARTL 65
H + SV + SRS +AS S CV TVT+ H++ L
Sbjct: 321 HTVSSSVPRASQNSRSRSASRSSHCVTRTVTILHTSVAL 359
>SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07)
Length = 694
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -3
Query: 199 VACLTSSHIETKSVESGGTSRSCTASSVSICVE 101
++CL +S + ES +S ++S+V C+E
Sbjct: 521 ISCLLASFCARRCAESASSSTGSSSSNVEACLE 553
>SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2)
Length = 466
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 39 IIYLLSGSRSVRAECDNVTVLSTQIDTLLAVQDREVPPDS 158
I+ LL R + N+ + +I +L+ DRE+ PD+
Sbjct: 98 ILNLLCCGRQINFSGSNMPTSNLRISRILSETDREIAPDA 137
>SB_5034| Best HMM Match : Extensin_2 (HMM E-Value=0.0055)
Length = 695
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -1
Query: 165 RVSSREAPPGPVLQAVC 115
R S APP P LQAVC
Sbjct: 207 RASKIAAPPAPSLQAVC 223
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -1
Query: 165 RVSSREAPPGPVLQAVC 115
R S APP P LQAVC
Sbjct: 260 RASYGAAPPAPSLQAVC 276
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -1
Query: 165 RVSSREAPPGPVLQAVC 115
R S APP P LQAVC
Sbjct: 401 RASYGAAPPAPSLQAVC 417
>SB_54139| Best HMM Match : DUF1353 (HMM E-Value=6.5)
Length = 138
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 105 TQIDTLLAVQDREVPPDSTLLVSIWLEV-RHATVQRAG 215
TQ+DT++ V R V L++ ++EV R A R+G
Sbjct: 4 TQLDTVVTVACRHVSYSLPLIIKAFIEVRRQAYTARSG 41
>SB_39796| Best HMM Match : VWA (HMM E-Value=0)
Length = 2119
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -3
Query: 199 VACLTSSHIETKSVESGGTSRSCTASSVSICVESTVTLSHSA 74
VA LTS+HI T++ + TS + T + I + +T T + +A
Sbjct: 1867 VATLTSTHITTQTNTAVTTSVAMTTYTHLITITNTETKTETA 1908
>SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1128
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = +3
Query: 75 AECDNVTVLSTQIDTLLAV-QDR 140
++CDNVTV +D L++V QDR
Sbjct: 774 SKCDNVTVQRCGVDPLVSVTQDR 796
>SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 25 LCFLLSSTYCPVAGVC 72
+C LLS T CP+ VC
Sbjct: 222 VCLLLSITVCPLLSVC 237
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 25 LCFLLSSTYCPVAGVC 72
+C LLS T CP+ VC
Sbjct: 386 VCLLLSITVCPLLSVC 401
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +1
Query: 34 LLSSTYCPVAGVCERSATM*R-CSQHKSTHCLQYRTGRCLP 153
LLS YCP+ VC R C +CL CLP
Sbjct: 421 LLSVRYCPLLSVCYCPLLSVRYCPLLSVRYCLFVTVHYCLP 461
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 46 TYCPVAGVCERSATM*RCS 102
T+CP+ G C SA RCS
Sbjct: 380 TFCPLVGQCISSADPSRCS 398
>SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)
Length = 1093
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 147 APPGPVLQAVCRFVLRAPSHCRTPLAHS 64
+PP L+ VC L +P C +PL ++
Sbjct: 837 SPPKNTLKQVCPSQLESPKQCISPLKNT 864
>SB_7361| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 148 GTSRSCTASSVSICVESTVTLSHSARTLLLPD 53
G +SCTASS ++ST S S + PD
Sbjct: 462 GNGQSCTASSSCSAIKSTSPQSSSGTYSIDPD 493
>SB_33275| Best HMM Match : PDZ (HMM E-Value=5.2e-11)
Length = 881
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -3
Query: 238 SQQPHRGDPAR*TVACLTSSHI--ETKSVESGGTSRSCTASSVS 113
SQQ PA +AC T+ H+ T S ES G S +SS S
Sbjct: 811 SQQAKVSTPAIDVLACNTNGHVVSTTSSPESLGDSLMSQSSSHS 854
>SB_19455| Best HMM Match : Amino_oxidase (HMM E-Value=0.0003)
Length = 658
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 108 QIDTLLAVQDREVPPDSTLLVSIWL 182
Q+DT+ V PP ST +SI+L
Sbjct: 513 QLDTIFGVYASRSPPLSTTTISIYL 537
>SB_8059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 196 ACLTSSHIETKSVESGGTSRSCTASSVSICVESTVTLSHSA-RTLLLPD 53
AC + + T++VE + CT + ++ +V L+HS+ T +PD
Sbjct: 48 ACFNNGYKYTRTVEHILETLKCTRLIDGVTIDRSVKLAHSSVLTRGIPD 96
>SB_58219| Best HMM Match : SOCS_box (HMM E-Value=2e-07)
Length = 507
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = -1
Query: 174 LRLRVSSREAPPGPVLQAVCRFVLRAPSHC----RTPLAHSCYRTIS 46
+RL+V P LQ +CRFV+R C + PL R +S
Sbjct: 444 VRLQVPISRFNTVPPLQFLCRFVIRQNIRCDQLDQLPLPKQIIRNLS 490
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 166 KSVESGGTSRSCTASSVSICVEST 95
KS E + SC SS SIC E+T
Sbjct: 3416 KSEEQEQSEASCVQSSSSICEENT 3439
>SB_30776| Best HMM Match : HLH (HMM E-Value=1.7e-13)
Length = 1217
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -3
Query: 163 SVESGGTSRSCTASSVSICVESTVTLSHSARTL 65
SV + S+S TAS+ S+ +T LSHS +L
Sbjct: 884 SVATHPASKSSTASNRSLGPVTTTRLSHSIESL 916
>SB_4563| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1473
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/48 (37%), Positives = 20/48 (41%)
Frame = +2
Query: 68 CASGVRQCDGALNTNRHTACSTGPGGASRLDTLSLNMAGSEARHGSTS 211
C S + GAL+ RH C G AS D S G GSTS
Sbjct: 950 CGSSMALAAGALHIARHVDCRADTGTAS-ADARSQREMGEP--QGSTS 994
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,664,392
Number of Sequences: 59808
Number of extensions: 166277
Number of successful extensions: 545
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 16,821,457
effective HSP length: 57
effective length of database: 13,412,401
effective search space used: 295072822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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