BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0003_L13 (240 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g36840.1 68415.m04518 ACT domain-containing protein contains ... 28 1.00 At2g39620.1 68415.m04857 pentatricopeptide (PPR) repeat-containi... 27 1.3 At5g23140.1 68418.m02706 ATP-dependent Clp protease proteolytic ... 27 1.7 At4g32640.1 68417.m04646 sec23/sec24 transport protein-related 27 2.3 At4g14170.1 68417.m02188 pentatricopeptide (PPR) repeat-containi... 27 2.3 At5g18650.1 68418.m02214 zinc finger (C3HC4-type RING finger) fa... 25 5.3 At5g01060.1 68418.m00009 protein kinase family protein contains ... 25 5.3 At1g71220.1 68414.m08219 UDP-glucose:glycoprotein glucosyltransf... 25 5.3 At3g01170.1 68416.m00021 expressed protein 25 7.0 At1g69850.1 68414.m08039 nitrate transporter (NTL1) identical to... 25 7.0 At1g66910.1 68414.m07604 protein kinase, putative similar to rec... 25 7.0 At1g11390.1 68414.m01308 ABC1 family protein contains Pfam domai... 25 7.0 At3g02830.1 68416.m00275 zinc finger (CCCH-type) family protein ... 25 9.3 At2g48160.1 68415.m06031 PWWP domain-containing protein 25 9.3 At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put... 25 9.3 >At2g36840.1 68415.m04518 ACT domain-containing protein contains Pfam profile ACT domain PF01842 Length = 410 Score = 27.9 bits (59), Expect = 1.00 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 4/66 (6%) Frame = -3 Query: 196 ACLTSSHI-ET---KSVESGGTSRSCTASSVSICVESTVTLSHSARTLLLPDNK*MIVKN 29 AC TSS + ET V +S T+S+VSI V+++++ +H+ + D+K ++ Sbjct: 201 ACSTSSSVAETLFSSDVSGEHSSGLHTSSNVSIAVDNSLSSAHTLIHITCQDHKGLLYDI 260 Query: 28 RETARD 11 T +D Sbjct: 261 MRTFKD 266 >At2g39620.1 68415.m04857 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 836 Score = 27.5 bits (58), Expect = 1.3 Identities = 12/38 (31%), Positives = 20/38 (52%) Frame = +3 Query: 102 STQIDTLLAVQDREVPPDSTLLVSIWLEVRHATVQRAG 215 S + L++Q+ E+ PDS +S+ RHA + G Sbjct: 687 SCAVSLFLSMQENELKPDSVSFLSVLSACRHAGLVEEG 724 >At5g23140.1 68418.m02706 ATP-dependent Clp protease proteolytic subunit, putative nClpP2/nClpP7; similar to SP:Q9X6W8 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) from [Azospirillum brasilense] Length = 241 Score = 27.1 bits (57), Expect = 1.7 Identities = 14/61 (22%), Positives = 28/61 (45%) Frame = +3 Query: 42 IYLLSGSRSVRAECDNVTVLSTQIDTLLAVQDREVPPDSTLLVSIWLEVRHATVQRAGSP 221 + L +G++ R N TV+ Q + Q +++ + +V +W + V+ G P Sbjct: 131 LLLAAGAKGQRRSLPNATVMIHQPSGGYSGQAKDITIHTKQIVRVWDALNELYVKHTGQP 190 Query: 222 L 224 L Sbjct: 191 L 191 >At4g32640.1 68417.m04646 sec23/sec24 transport protein-related Length = 1069 Score = 26.6 bits (56), Expect = 2.3 Identities = 15/49 (30%), Positives = 24/49 (48%) Frame = -1 Query: 231 SRIEVIPLVEPWRASLPAILRLRVSSREAPPGPVLQAVCRFVLRAPSHC 85 SRI+ + P +S P + R S++ PP P A +V+R +C Sbjct: 329 SRIDPNQIPRPGSSSSPTVFETRQSNQANPPPP---ATSDYVVRDTGNC 374 >At4g14170.1 68417.m02188 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 458 Score = 26.6 bits (56), Expect = 2.3 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = -1 Query: 207 VEPWRASLPAILRLRVSSREAPPGPVLQAVC 115 V P +LP ILR +SREA G ++ +C Sbjct: 111 VRPDDFTLPLILRACSASREAKSGDLIHVLC 141 >At5g18650.1 68418.m02214 zinc finger (C3HC4-type RING finger) family protein contains Pfam domain PF00097: Zinc finger, C3HC4 type (RING finger) Length = 267 Score = 25.4 bits (53), Expect = 5.3 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 6/53 (11%) Frame = -2 Query: 161 CRVGRHLPVLYCKQC-----VDLC*EHRHIV-ALRSHTPATGQ*VDDSKKQRN 21 CRVG +CK+C V L HR + ++R H P + + DS K N Sbjct: 116 CRVGGRENFFHCKKCGSCYAVGLRNNHRCVENSMRHHCPICYEYLFDSLKDTN 168 >At5g01060.1 68418.m00009 protein kinase family protein contains eukaryotic protein kinase domain, INTERPRO:IPR000719 Length = 499 Score = 25.4 bits (53), Expect = 5.3 Identities = 14/48 (29%), Positives = 23/48 (47%) Frame = -1 Query: 210 LVEPWRASLPAILRLRVSSREAPPGPVLQAVCRFVLRAPSHCRTPLAH 67 + E + +L ++ +V+S E P LQA C F L + + L H Sbjct: 445 MTEMFSEALSDAMQAQVASPEWPIPLYLQAACLFKLEMEAEAKEALRH 492 >At1g71220.1 68414.m08219 UDP-glucose:glycoprotein glucosyltransferase, putative similar to UDP-glucose:glycoprotein glucosyltransferase precursor GB:Q09332 [SP|Q09332] from Drosophila melanogaster, [gi:7670746] and [gi:11346464] from Homo sapiens Length = 1673 Score = 25.4 bits (53), Expect = 5.3 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -1 Query: 207 VEPWRASLPAILRLRVSSREAPPGPVL 127 ++ W AS PA + L VS +A GP L Sbjct: 159 LQSWLASAPACISLDVSVGDAVQGPEL 185 >At3g01170.1 68416.m00021 expressed protein Length = 215 Score = 25.0 bits (52), Expect = 7.0 Identities = 9/20 (45%), Positives = 12/20 (60%) Frame = +3 Query: 168 VSIWLEVRHATVQRAGSPLC 227 +S WL + T+QR G P C Sbjct: 114 ISTWLVILLCTMQRCGKPNC 133 >At1g69850.1 68414.m08039 nitrate transporter (NTL1) identical to nitrate transporter (NTL1) GI:3377517 [Arabidopsis thaliana] Length = 585 Score = 25.0 bits (52), Expect = 7.0 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = +3 Query: 21 VSLFFTIIYLLSGSRSVRAECDNVTVLSTQIDTLLA 128 +++F +I+ LSGSR R + + L+T + LLA Sbjct: 221 IAIFVSILIFLSGSRFYRNKIPCGSPLTTILKVLLA 256 >At1g66910.1 68414.m07604 protein kinase, putative similar to receptor serine/threonine kinase PR5K gi|1235680|gb|AAC49208 Length = 666 Score = 25.0 bits (52), Expect = 7.0 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 6/45 (13%) Frame = -1 Query: 207 VEPWRASLPAILRL------RVSSREAPPGPVLQAVCRFVLRAPS 91 ++PW PA+ R+ + + E PP PVLQ + L+ S Sbjct: 604 IQPWPLDRPAMNRVVEMMEGNLDALEVPPRPVLQQIPTATLQESS 648 >At1g11390.1 68414.m01308 ABC1 family protein contains Pfam domain, PF03109: ABC1 family Length = 624 Score = 25.0 bits (52), Expect = 7.0 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +3 Query: 174 IWLEVRHATVQRAG 215 IWLE+ H T++RAG Sbjct: 211 IWLEMVHRTLERAG 224 >At3g02830.1 68416.m00275 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) Length = 397 Score = 24.6 bits (51), Expect = 9.3 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = +3 Query: 132 QDREVPPDSTLLVSIWLEVRHATVQRAGSPLC 227 +DR+ PP LL SI L + R G PLC Sbjct: 301 RDRQAPPPDCLLSSIGLPL------RPGEPLC 326 >At2g48160.1 68415.m06031 PWWP domain-containing protein Length = 1366 Score = 24.6 bits (51), Expect = 9.3 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = +2 Query: 92 DGALNTNRHTACSTGPGGASRLDTLSLNMAGSEARHGS 205 DGAL + S+G + + T SLN GS+ + S Sbjct: 260 DGALRREKRIRRSSGHSESDDVATSSLNSHGSDEENAS 297 >At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, putative similar to light repressible receptor protein kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376; contains leucine rich repeat (LRR) domains, Pfam:PF00560; contains protein kinase domain, Pfam:PF00069 Length = 890 Score = 24.6 bits (51), Expect = 9.3 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = +2 Query: 125 CSTGPGGASRLDTLSLNMAGSEARHGSTSGITSMRLL 235 CS SR+ +SLN+ GSE TS I+ + LL Sbjct: 403 CSYPDSEGSRI--ISLNLNGSELTGSITSDISKLTLL 437 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 5,685,028 Number of Sequences: 28952 Number of extensions: 104625 Number of successful extensions: 305 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 304 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 305 length of database: 12,070,560 effective HSP length: 58 effective length of database: 10,391,344 effective search space used: 218218224 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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