Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_L12
(406 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 209 1e-55
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 209 1e-55
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.27
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 0.84
SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c... 27 0.84
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 2.6
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 2.6
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ... 25 3.4
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po... 25 4.5
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 25 4.5
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 5.9
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c... 25 5.9
SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|ch... 24 7.8
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 24 7.8
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 209 bits (510), Expect = 1e-55
Identities = 93/118 (78%), Positives = 104/118 (88%)
Frame = +3
Query: 21 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 201 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRIIKLWSCAGADRLQTGMRGA 374
+SEALEA RIC NKYLVK GKD FH+R+R HPFHV+RI K+ SCAGADRLQTGMR A
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHA 118
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 209 bits (510), Expect = 1e-55
Identities = 93/118 (78%), Positives = 104/118 (88%)
Frame = +3
Query: 21 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 201 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRIIKLWSCAGADRLQTGMRGA 374
+SEALEA RIC NKYLVK GKD FH+R+R HPFHV+RI K+ SCAGADRLQTGMR A
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHA 118
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 29.1 bits (62), Expect = 0.27
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 45 YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 221
Y+ N ++FC V + KI + +KRA +D LC+ +S + E ++ +LE+
Sbjct: 34 YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93
Query: 222 G 224
G
Sbjct: 94 G 94
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 27.5 bits (58), Expect = 0.84
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 102 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 221
DPK+R+F KRAT + C LV+ + + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360
>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 302
Score = 27.5 bits (58), Expect = 0.84
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = -3
Query: 362 PSLEPISSSARPQFNDADDMEGV*SHPDVELI---FTAVLYE 246
P+ +P+ S A PQ A ++ + S DV+++ F A++ E
Sbjct: 200 PNQQPVDSVANPQLRKASEITTISSRSDVDILLGKFKALIQE 241
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.8 bits (54), Expect = 2.6
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -2
Query: 216 PAPQNSAARTHQTLSARIVGSHPLSLSFCPSRKYGSLGQA 97
P P +S+ R Q+LSA + S+P S PS GSL +
Sbjct: 473 PKPSSSSRRRSQSLSAMLKTSNPYMPS--PSLLSGSLANS 510
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 2.6
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +3
Query: 123 DLGKKRATVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNCGK 266
++ KKRA DD + +VS EYE L SS+ ++ N KY+ KN K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085
>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 263
Score = 25.4 bits (53), Expect = 3.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 374 GTTHPSLEPISSSARPQFNDADDM 303
G+ H + ISSS+ P +D DD+
Sbjct: 122 GSKHRKNDCISSSSNPDISDVDDL 145
>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 4.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -3
Query: 161 WEVIHCRSLFAQVENTDLWVRHTPT 87
+ ++H +LFA EN D ++ PT
Sbjct: 343 YAILHWNTLFANEENWDSYIPQDPT 367
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 25.0 bits (52), Expect = 4.5
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -3
Query: 368 THPSLEPISSSARPQFNDAD 309
THP LEP++ +P+ D
Sbjct: 362 THPGLEPLNEEEKPEIEPFD 381
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 24.6 bits (51), Expect = 5.9
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +3
Query: 78 SRFCRGVPDPKIRIFDLGKKRATVDDFP-LCVHLVSDE 188
S FC PDPK K A DD P + H+ S++
Sbjct: 84 SFFCTTTPDPKTESPSFVKYNAHCDDHPEISGHVSSND 121
>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 297
Score = 24.6 bits (51), Expect = 5.9
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +1
Query: 127 WAKRERQWMTSH 162
W +RERQW+ H
Sbjct: 91 WLRRERQWLQRH 102
>SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 232
Score = 24.2 bits (50), Expect = 7.8
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 353 EPISSSARPQFNDADDMEGV*SHPDVELIF 264
E S+ +P F+D DD++ + DV F
Sbjct: 14 ENTKSNTKPNFDDLDDLDDILDDLDVPSAF 43
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 24.2 bits (50), Expect = 7.8
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 213 LEAGRICCNKYL-VKNCGKDQFHIRMRLHPFHVIRIIKLW 329
L A + N YL + C + + +R R H FH R +W
Sbjct: 11 LSATWLAPNIYLLISGCLQYFYEVRKRSHYFHFRRFWTIW 50
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,869,072
Number of Sequences: 5004
Number of extensions: 37733
Number of successful extensions: 125
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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