Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_L12
         (406 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28982| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_4321| Best HMM Match : Ank (HMM E-Value=0)                          28   2.5  
SB_45328| Best HMM Match : DUF1162 (HMM E-Value=6.1e-09)               27   4.4  
SB_9755| Best HMM Match : Sushi (HMM E-Value=0)                        27   5.8  
SB_39665| Best HMM Match : Pox_A32 (HMM E-Value=0.023)                 27   7.7  
SB_34845| Best HMM Match : CXC (HMM E-Value=0.03)                      27   7.7  
SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)         27   7.7  

>SB_28982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1287

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +1

Query: 283 G*DYTPSMSSASLNCGRALELIGSRLGCVVPSGKPQGT 396
           G  Y PS  S+    G     +G   G  +PSG PQGT
Sbjct: 502 GGSYVPSFQSSGYGGGAQPSHVGGEWG-TIPSGVPQGT 538


>SB_4321| Best HMM Match : Ank (HMM E-Value=0)
          Length = 915

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +3

Query: 48  RYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 227
           R CK K   ++R C+G    + R+     K    D+  +C    SDE      E  +  R
Sbjct: 444 RMCKGKGRDETRMCKGEGTDETRMC----KSEGTDETRMCKDEGSDETRMCKDEGTDETR 499

Query: 228 IC 233
           +C
Sbjct: 500 MC 501


>SB_45328| Best HMM Match : DUF1162 (HMM E-Value=6.1e-09)
          Length = 1508

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
 Frame = -2

Query: 240  CC--NRYGLLPAPQNSAARTHQTLSARIVGSHPLSLSFCPSRKYGSLG--QAHPDKTEI* 73
            CC  N  G L + ++ A    +  S   + SH    + C  R Y S+G  Q+H D   + 
Sbjct: 1017 CCRVNSVGRLQSHEDGATVCCRVYSVGRLQSHEDGATVC-CRVY-SVGRLQSHEDGATVC 1074

Query: 72   DTVYSYNIDNISLVGAPLC 16
              VYS N   + +V + +C
Sbjct: 1075 WRVYSVNFSRMKMVRSSVC 1093


>SB_9755| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1351

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +1

Query: 259 AVKISSTSG*DYTPSMSSASLNCGRALELIGSRLGCVVPSGKPQGTVA 402
           A +  S SG   T   ++ +  C R  EL+GS L    PSG   GT A
Sbjct: 125 APRNGSMSG-SLTVYPNTKTFTCDRGFELLGSSLRRCTPSGLWDGTNA 171


>SB_39665| Best HMM Match : Pox_A32 (HMM E-Value=0.023)
          Length = 1640

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 404  RATVPWGFPDGTTHPSLEPISSSARPQ 324
            RAT P    DG T P+  P+++ +RP+
Sbjct: 1446 RATDPHAAADGGTPPARPPLAADSRPR 1472


>SB_34845| Best HMM Match : CXC (HMM E-Value=0.03)
          Length = 1397

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 147  VDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKD-QFH 278
            +D  P C   VS  YE   + +    R  C K L ++C  D +FH
Sbjct: 1061 LDPTPECTERVSKTYESGHTLSTATARQQCLKELKESCNDDLEFH 1105


>SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)
          Length = 177

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 213 LEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRI 317
           L    I C  Y  KN  +D   +RM +HP H IRI
Sbjct: 115 LSYAHIFCGSYS-KNAAEDI--VRMSVHPLHPIRI 146


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,744,416
Number of Sequences: 59808
Number of extensions: 318143
Number of successful extensions: 1091
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)